- Transcript HORVU5Hr1G038840.1
- Transcript IDHORVU5Hr1G038840.1
- Gene IDHORVU5Hr1G038840
Barley RTD
Exon Structure of HORVU5Hr1G038840.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 280032568 | 280031676 | + |
| chr5H | 2 | 280032882 | 280032720 | + |
| chr5H | 3 | 280033483 | 280033320 | + |
| chr5H | 4 | 280034038 | 280033780 | + |
| chr5H | 5 | 280034421 | 280034140 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g31000.1 | +1 | 0.0 | 652 | 358/523 (68%) | protein|pumilio-family RNA binding repeat domain containing protein, expressed |
| TAIR PP10 | AT1G22240 @ ARAPORT AT1G22240.1 @ TAIR |
+1 | 1e-119 | 364 | 176/319 (55%) | Symbols: APUM8, PUM8 | pumilio 8 | chr1:7853084-7854963 FORWARD LENGTH=515 |
| BRACH PP3 | Bradi4g07100.1.p | +1 | 0.0 | 786 | 410/507 (81%) | pacid=32788499 transcript=Bradi4g07100.1 locus=Bradi4g07100 ID=Bradi4g07100.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1761 bp)
>HORVU5Hr1G038840.1 1761 150831_barley_pseudomolecules TGCCTCAACGAACCATCTCCAGGAAAACACCTCACCCCAATCCAACCCCAAACCAATCCT CTCCACAAACAAATCTAACAGAATTCCCCCACTGATTTTCTCATCGAGATTCGATCAAGA TAGTAGTTGGAGATGAAGCTGGACAGGGAGATGGAGATGCTCCTCAACGAGATCCCTCTC CTCCTCCACGGCGACGTCCTCGGCTGCAGCGAGCCAGCCGCCGCCGAGACCGACGCCGGC GCCGTCGACTTCGCTTATCTCATCCAAGAACTCGGCGAGATGGGGTTCGTCGAGGACGAC GACGACGACGACAGTTTCCTTTACCCAAGGAAGGCCAGCTCATCTCCGACGAGCAACCTC CATTTCATGGACGCTGAGAATTTCGTGGCGTCGCATCCCTTCTCCATGGACAAAGACCGC GAGAGGGCTCTTTTCGATCCGTTTCCCTTCTCCAGCACCTGCTTCGACGCCGCCGTGGGC GACGACTGGGACCTCCTGTGTCGGCCGGTGAGGTCCCGGCTGTGCAAGACGGCGAGGCCG AAGAAGGGTACCTGCAGCAACGGCTGCCAGGCGACGAGCCCCAAGAAGTGCGCGGCGGCG AAGCCGTCCAAGTACGAGAGCCTTGTCGGGCTGCGCGGGTACATGTACCACGTGGCCAGG GACCAGCACGGCTGCCGGTTCCTCCAGCAGCGGCTCGACGACGGCAAGCGCGAGGTCGAT TTCATCTTCACCGGCGTCGCCCGTCACGCCGTCGACCTCATGGTGAACCCATTCGGTAAC TACCTCATGCAGAAGCTGCTAGCCGTCTGCAGCGAGGAGCAGAGGATGGGCATCGTGCTG ACCCTCACAAAGGAACCCTTCGTGCTCGTCAGGATCTCTCTCAATGTACATGGGACAAGG GCGGTTCAGAAGCTGATTGAAAGCTTGAAGGCAAGGGAGGAGATTCAGCTCGTCGTCGCA GCTCTGCGCCCCGGGTTCCTGGAGCTCATAAAGGATCCTAATGGTAATCATGTCGTGCAG AAGTGCTTGCAATCGTTCGGGGCCGATGATAACAAGCCGATCTTCGATGCTGCTGCTATT TACTGCCTTGATATTGGGATGCAATGCCATGGCTGCTGCGTCCTACAGCGGTGTATCGCG CGTTCGACTGGTGAGCACAAGGAGAAGCTGGTTGCCGCGATCGCTCGCAATGGGTTCGAA CTTGCACAGGATGCCTATGGAAACTATGTTGTTCAGTATGTGATAGAACTAAAGGTCGCT GCTGCAAATGCAAGTCTGGCACAACAGTTTGAAGGCAAGTACATCCACCTCTCCATGCAG AAGTTCAGCAGCAACGTTGTCGAGAAATGCCTGAAAGTTTTCAAGGAAGCTGACAAAGCG AACATCATCCTGCAGCTCCTTGCTGCGCCGCAGTTCGAGCGGTTGCTTCTGCACCCTTAC GCAAACTATGTAGTCTACGCAGCACTTCAGAATTCCAAGGGCTCTCTACACTCTGCACTG ACCAACGCGATCCGGCCTCACGTGGAGCTACTCAGGACCAGCCCATACTGCAAGAGGATC TACTCTCGAGCTTTGCTGAAAAAGTGATGGTCTGATGAGACCATCTCACCATGTGTAACA ATAAAGATAGTTTGTCTTGTGCTATTTTTTCGGATTCAAAAGGGATAAAAGTGATCTCAC CATGTAGATCTTGTATAGATCAAAATTTATTTGGTCATGTACTTCTATGTGCACCTTTAT TTGATGCACTCTTCCGTTGCC