Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u34851	68.9	+	+	2746	-1238	Containing

Transcripts from Gene HORVU5Hr1G038840

Transcript	Length(bp)	Description
HORVU5Hr1G038840.1	1761	gene=HORVU5Hr1G038840 CDS=133-1587

Exon Structure of HORVU5Hr1G038840

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os12g31000.1	+1	0.0	652	358/523 (68%)	protein|pumilio-family RNA binding repeat domain containing protein, expressed
TAIR PP10	AT1G22240 @ ARAPORT AT1G22240.1 @ TAIR	+1	1e-119	364	176/319 (55%)	Symbols: APUM8, PUM8 | pumilio 8 | chr1:7853084-7854963 FORWARD LENGTH=515
BRACH PP3	Bradi4g07100.1.p	+1	0.0	786	410/507 (81%)	pacid=32788499 transcript=Bradi4g07100.1 locus=Bradi4g07100 ID=Bradi4g07100.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons