- Transcript HORVU5Hr1G019300.4
- Transcript IDHORVU5Hr1G019300.4
- Gene IDHORVU5Hr1G019300
Barley RTD
Exon Structure of HORVU5Hr1G019300.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84450462 | 84450127 | + |
| chr5H | 2 | 84450961 | 84450535 | + |
| chr5H | 3 | 84451442 | 84451355 | + |
| chr5H | 4 | 84451613 | 84451552 | + |
| chr5H | 5 | 84451927 | 84451787 | + |
| chr5H | 6 | 84473806 | 84473681 | + |
| chr5H | 7 | 84474019 | 84473884 | + |
| chr5H | 8 | 84476025 | 84475935 | + |
| chr5H | 9 | 84477467 | 84477275 | + |
| chr5H | 10 | 84478810 | 84477550 | + |
| chr5H | 11 | 84479142 | 84478916 | + |
| chr5H | 12 | 84480117 | 84479843 | + |
| chr5H | 13 | 84480655 | 84480237 | + |
| chr5H | 14 | 84480831 | 84480728 | + |
| chr5H | 15 | 84483365 | 84483169 | + |
| chr5H | 16 | 84483994 | 84483785 | + |
| chr5H | 17 | 84490180 | 84489767 | + |
| chr5H | 18 | 84491799 | 84491518 | + |
| chr5H | 19 | 84493118 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +1 | 0.0 | 1268 | 626/874 (72%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+1 | 0.0 | 629 | 361/856 (42%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.2.p | +1 | 0.0 | 1355 | 683/873 (78%) | pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5626 bp)
>HORVU5Hr1G019300.4 5626 150831_barley_pseudomolecules CCCGAGCGGGTCTCCTCCCTTCCCCCCACTTCCTTTCGAGTCAAAAGGTGAACCCGAAGC GAAGCGGCCAAGCAGCAAAACCTTCGCCCCTAAGCTCACCAAATCAAACCCCACGAGCGC TCGACACAGATTCACCCGTGCGCCTCGGCAGCAGCCCAAGCGTACTCGCCGCCTCCGCCG CCTCGCTGCCGCCGCGCCGCCGATTTCGTTCTCGCGCCAGCCCAGAATCTCATCAGACAC CACCATGGATGCCGCCGCCGCCGCCGCCCCCCCCGCCGCGGACTCAGCCGTGACAGAGGA AGCACACAAGGAGGATCCGGAGATCGTAGCGAGATGGTACCAGCTGGAGGCGCTGGAGCG GGCCATGAGCGGGAACACGGTGGCTTTCCTGGATACGGGGGCCGGGAAGACGCTCATCGC GGGGTTGCTGCTGCGCGCCTACGCGCACCTCGTGCGGAAGCCGGCGCGGGAATTCGCCGT CTTCCTCGTCCCCACCCGCGTGCTCGTGGAGCAGCAGGCACGGGTCGTCGAGGCGCATAC CGACCTCCGCGTCTCCAAGTTCACCGGCGACATGGGCGTCGACTTCTGGGACGCCGCAAT CTGGCGCCGCGTGGTGGACGACGCCGAGGTGCTTGTCATGACGCCGCAGATCCTCCTCGA CAACCTCCGACACAGCTTCTTCCGCCTCCAGGACATCGCGTTGCTCATCTTCGACGAGTG CCACCGCGCCAAGGGCAACTCCCCGTATGCGTGCATTCTCAAGGAATTCTACCACCCTGT AATGAATTCTAGACCACGGGGCCCTCTGCCGAGGATATTTGGGATGACTGCTTCGCCCAC AGATGCAAAAAATCAGCTGCAAGAGAGCTATTCCAAACGAATCGTCGAACTGGAGAATCT ATTGAACTCAAAGGTGTACACAGTTGACAATGAATCGGCTTTATCGGAATATATACCATT TGCCACTACGAGGATTGTGGAGTACGATGATTCTATCATCCCATCCAACTCACATAACCA TATTAACAGTTGTTTGGACAGGTTGCAAGAGAAGCATTTAAAAGTCCTCAAGGCAAATCT ACATGGATCGTCTCGGAAAAATGCGAAGAAAGGGATATCAAAATTACACAAGGCATTCTT ATATTGCACGGCTAATCTTGGAGTATGGCTAGCGGCAAAGGCTGCTGAGATACACTCAAC AACTAACGAACAATTCTTATCTTTCTGGGGTGAAGAACTGGATAAGAATGTTGAAGGCTT TGTTAGAAGCTATAGTGAAGAAGTATACAGGGAACTCTCATGTTTTTCAGAGAGAGGTCA TATTGGTAAAGATTTTGAAGCTGATTTGCAAGATGGGTTATTGACACCTAAAGTTCATTG TCTTGTTCAGTTTCTTCTGGAATACAGGCACATGCAAGACATAAGATGCATTGTATTTGT CGAGAGAGTTGTTACAAGCATTGTGTTGGAGTCTCTCCTGTCCATTATCAATCAAATGCC TGGGTGGATTATTAAACACATTGCAGGAAACAGACCTATGTTGCACAACCAGAGTAGAAA TAAACAAACGGAAATTGTTGACGCCTTTAAAGGAGGAAAGGTACATATAATTGTGACCAC ACAAGTATTGGAGGAGGGGCTGAATGTGCCAGGTTGTCACTTAGTAATTCGCTTTGATCC ACCAACGACTGGGCGCAGCTTTATACAGTCACGTGGTCGAGCTCGGATGCCAAACTCTGA ATATGTTTTACTTGTTAGAAGGCACGTCCTTCGATTTTTGTTGCTATTTTTTTGTTTCCA GCGCAAATTTTATTTAATTGTTCATCTTCATGCAAATTAAAATCTTTGTCTTCTGTATTG TGGACATTATCCACCTCTTTTCCCACTTCATCAGTTGAATATGATGTGCTCAGTATATAA TCCTTGGTCACTAGTACCAGTAAATTGTTGTTTACCTATATTACTCAGTGTGTTCCGTTT ATCAGTTGAATTGTTTATATTGGATTAAGCATACTGGGCTGGGTGTTAAATGCTAGTGTT CACTTACTATTGTGAGATGACTTGATGTGACTGCCGGTATGACTCCAAATCCTGATATGG TCAAACCTGAAACAATTGATAAATGCCAAGTTCAAAAGCCACTTGTTTGCTTTTTCATTA AGAATCTAAAATTGACTAGTGTTTCCTAGTGTTCACTTAATATTGCAAGTTGGCGTGATG TGAGTGCCGTTATGATACCAAATCCTGATATGTTTTCCTGTCAGATCTGTATGGAAACCG CAGGTAACCATAACATGATAAGGATCTGTTTTCAATCGAGACAACTGTTCATATTTGAGT AGAAAACCGTCCGACTTTTTGCTCGGTTATTGGTGGAAACTAGTCAGCACTTATGATTAT TGTCAGTGAGCTGTGAATTCTATTCCTACTGATTACATTTCTCTATTTAGCTATACAAAA AATGTGGACTCGTGCTACAGTGGAAAAATCGCTATACTCAAGTTGTCTTAAGTTGATTTA TTAGTACAGTTTCCTCTTGTATTGCAAAAAAACCCTACTTTACCTTTGTTCTCATCATCA CTTCTAGCTCTTTTTGGCATGCTACGTAACATGATGATGCAATGCTTGTGTTTCTGTATC AGGGGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATGATG CGGGAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCACTAGAAAACACCTTGTTG CAGGGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTGACTATGAACTCAAGTGTC CAGTTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAATACTTTACACCTCTTCCG AGATTCATTATTGACAAGGAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGCCCT GTGCAGACTGTTAATGCAGAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTTAAG GCCTGCCGAGAATTACACGCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTTGGT TTTCCATGTGAAGAAGAACCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCTGTG TACTTCCCAGAGGAATTTGTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATATTAT TGCTATAAGATTTCAGTAGAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATACTT CTAGCTGTGAAATGTGATTTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTTGGT GCGCAAGATAATGCTAGTCTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAAGAA CAGGTAGTTATGGCCAGAAGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAAGAC CATTCTGAGGTCAGTAATGCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGAATT GTCTACCTGCTGCTACCCTTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTCTCG ACCTCGCAAGTGTATGTTGGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAACAA GTTGATTTACTGCAAACAAAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCCATT GTTTGCACCCCTCATAATAGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAATTCC AAATCTCTTCTGCACCTTCGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAGACT AGGCATGGACTCAGTCTAACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCTGTT GAAGTGCGGAATTTCCTCCACAAGCGCCATTATAAAAATAAAAAAGAATCGTGCACTTCA CATGGTGTTGAGTTGCCACCTGAGCTCTGCAGACTAGTCATGTCACCAGTCTCTACTAAT ACTTTGTACAGCTTCTCGATTATTCCTTCTGTAATGTACCGCATCCAGTGTCTGCTTCTT TCTGCAAAGTTGAAAGATCAACTGGGCCCAATAATGCAGCAGTTTGCCATACCAGCTCTG AAGATTCTAGAAGCAGTAACAACCAAGGAATGCCAAGAGGAATTTTCACAGGAATCATTA GAAACCCTTGGGGATTCTTTCCTCAAGTACATCGCCACGCAACATCTGTATGTCAAACAC AAGCTTCAGCATGAGGGGACATTAACCAAGATGAAGAAAAACTTAATCTCGAATGCAGCT CTATGCCAGCTGGCCTGCAACAACAATCTTGTGGGTTACATTCAAGGGGAAGAGTTTAAC CCAAAAGGTTGGATCATTCCAGGGCTTGGTTATGACATGTGTGGTAACAGCAAATTTTCC TTTTTAAGCTCCAATGATATGCACACTTTGAGGAAAATGTCTGTTAGAAGTAAGAGAATA GCAGATACAGTTGAGGCATTGATTGGAGCCTACCTTGGTGCTGCGGGAGAACAGGCTGCA TTTGTTTTCCTAAAATCATTAGGATTGGATATAGGATTTCACAGCACTATTCCACTTGAA AGGAAGATTGTATTAAAATCTGAAAAGTTCATCAACGTGAGAAGTTTGGAAATGATTCTT GGTTATGAGTTCAAGGATACTTCATTGTTGGTGGAAGCATTGACACATGGGTCATACCAG ACTGCTGGCACTACTGCATGCTATCAGAGGCTTGAGTTTCTCGGAGACGCTGTGTTGGAC CATCTCTTCACTATATATTTCTACAATAAGTACCCTGAATGTACTCCAGAATTGTTGACA GATCTTAGATCTGCTTCCGTTAACAACAATTGCTATGCGCATGCAGCTGCTAAAGCAGGA CTAAACAAGCACATTCTTCATTCGTCATTGCCATTGCACGGAAGGATGGCTTACTACTTT GAGAATTTTACTAAGCACCGATTTACAGGTCCATCACATGGTTGGGAAGCTGGCATTGGT CTACCCAAGGTTCTTGGGGATGTTATTGAATCATTAGCCGGTGCCATTTATCTTGACAGC AAGTATGACAAAGAGGTGGTTTGGAGAAGCATGAAAAAGCTATTGGAGCCTCTTGCGACA CCGGAGACGGTTGAGCGTGACCCAGTGAAACTGCTGCAGGAATTTTGTGATCGCAGGTCT TATAGCAGGTCTTACACAAAGGTCCAGAAAGATGGAGTGTCTTCGGTGGTTGGGGAGGTA CAGGTAGAAGGGACTACCTACTCAGCAACTGGAACTGGCCCTGATAAGGTTGTCGCAAAA AAGCTTGCAGCGAAGTTGCTGCTAGAAGATCTGAAGGCTATAGTACCATGACACGCTTGC ATTTGCAGATGATGCAATACTGTATAGCTCCTTCCGACTTCACTTGTATTGTGACTAGCC TGTAGGTAGCCTTTTGAAGTTTTTGTGGGAGTATGCGTGTACTTGACAAATGTGCAGCTC AATCATTGCTTGTGAATATTCAGACTATTGAACTGCACATCTGTGAAGTACGGGCATCGT CTCTCAGAACCATGGTACAGACGATAATGCTACAGTATCCTTAGACTTCTACTTGTACAG TTGTAAGCACAATCTTGAGTGGAAAGCTGGAATATCTTTTTCTCTC