- Transcript HORVU5Hr1G019300.3
- Transcript IDHORVU5Hr1G019300.3
- Gene IDHORVU5Hr1G019300
Barley RTD
Exon Structure of HORVU5Hr1G019300.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84450462 | 84450125 | + |
| chr5H | 2 | 84450961 | 84450535 | + |
| chr5H | 3 | 84451613 | 84451355 | + |
| chr5H | 4 | 84451927 | 84451787 | + |
| chr5H | 5 | 84473806 | 84473681 | + |
| chr5H | 6 | 84474019 | 84473884 | + |
| chr5H | 7 | 84476025 | 84475935 | + |
| chr5H | 8 | 84477467 | 84477275 | + |
| chr5H | 9 | 84477710 | 84477550 | + |
| chr5H | 10 | 84479142 | 84478592 | + |
| chr5H | 11 | 84480117 | 84479843 | + |
| chr5H | 12 | 84480655 | 84480237 | + |
| chr5H | 13 | 84480831 | 84480728 | + |
| chr5H | 14 | 84483365 | 84483169 | + |
| chr5H | 15 | 84483994 | 84483785 | + |
| chr5H | 16 | 84490180 | 84489767 | + |
| chr5H | 17 | 84491799 | 84491518 | + |
| chr5H | 18 | 84493181 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +2 | 0.0 | 1670 | 835/1216 (69%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+2 | 0.0 | 832 | 492/1196 (41%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.1.p | +2 | 0.0 | 1800 | 905/1207 (75%) | pacid=32792173 transcript=Bradi1g15440.1 locus=Bradi1g15440 ID=Bradi1g15440.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5024 bp)
>HORVU5Hr1G019300.3 5024 150831_barley_pseudomolecules GTCCCGAGCGGGTCTCCTCCCTTCCCCCCACTTCCTTTCGAGTCAAAAGGTGAACCCGAA GCGAAGCGGCCAAGCAGCAAAACCTTCGCCCCTAAGCTCACCAAATCAAACCCCACGAGC GCTCGACACAGATTCACCCGTGCGCCTCGGCAGCAGCCCAAGCGTACTCGCCGCCTCCGC CGCCTCGCTGCCGCCGCGCCGCCGATTTCGTTCTCGCGCCAGCCCAGAATCTCATCAGAC ACCACCATGGATGCCGCCGCCGCCGCCGCCCCCCCCGCCGCGGACTCAGCCGTGACAGAG GAAGCACACAAGGAGGATCCGGAGATCGTAGCGAGATGGTACCAGCTGGAGGCGCTGGAG CGGGCCATGAGCGGGAACACGGTGGCTTTCCTGGATACGGGGGCCGGGAAGACGCTCATC GCGGGGTTGCTGCTGCGCGCCTACGCGCACCTCGTGCGGAAGCCGGCGCGGGAATTCGCC GTCTTCCTCGTCCCCACCCGCGTGCTCGTGGAGCAGCAGGCACGGGTCGTCGAGGCGCAT ACCGACCTCCGCGTCTCCAAGTTCACCGGCGACATGGGCGTCGACTTCTGGGACGCCGCA ATCTGGCGCCGCGTGGTGGACGACGCCGAGGTGCTTGTCATGACGCCGCAGATCCTCCTC GACAACCTCCGACACAGCTTCTTCCGCCTCCAGGACATCGCGTTGCTCATCTTCGACGAG TGCCACCGCGCCAAGGGCAACTCCCCGTATGCGTGCATTCTCAAGGAATTCTACCACCCT GTAATGAATTCTAGACCACGGGGCCCTCTGCCGAGGATATTTGGGATGACTGCTTCGCCC ACAGATGCAAAAAGTAAGGACGAAGATGTGAACTTGTATATGTGTTTTACATCCTCAAGG ACTATTTTTTGAACAAACATCCTCTCAGTTCGACCAAATCTGTCACACTATTCCTTCCAT AGATCAGCTGCAAGAGAGCTATTCCAAACGAATCGTCGAACTGGAGAATCTATTGAACTC AAAGGTGTACACAGTTGACAATGAATCGGCTTTATCGGAATATATACCATTTGCCACTAC GAGGATTGTGGAGTACGATGATTCTATCATCCCATCCAACTCACATAACCATATTAACAG TTGTTTGGACAGGTTGCAAGAGAAGCATTTAAAAGTCCTCAAGGCAAATCTACATGGATC GTCTCGGAAAAATGCGAAGAAAGGGATATCAAAATTACACAAGGCATTCTTATATTGCAC GGCTAATCTTGGAGTATGGCTAGCGGCAAAGGCTGCTGAGATACACTCAACAACTAACGA ACAATTCTTATCTTTCTGGGGTGAAGAACTGGATAAGAATGTTGAAGGCTTTGTTAGAAG CTATAGTGAAGAAGTATACAGGGAACTCTCATGTTTTTCAGAGAGAGGTCATATTGGTAA AGATTTTGAAGCTGATTTGCAAGATGGGTTATTGACACCTAAAGTTCATTGTCTTGTTCA GTTTCTTCTGGAATACAGGCACATGCAAGACATAAGATGCATTGTATTTGTCGAGAGAGT TGTTACAAGCATTGTGTTGGAGTCTCTCCTGTCCATTATCAATCAAATGCCTGGGTGGAT TATTAAACACATTGCAGGAAACAGACCTATGTTGCACAACCAGAGTAGAAATAAACAAAC GGAAATTGTTGACGCCTTTAAAGGAGGAAAGGTACATATAATTGTGACCACACAAGTATT GGAGGAGGGGCTGAATGTGCCAGGTTGTCACTTAGTAATTCGCTTTGATCCACCAACGAC TGGGCGCAGCTTTATACAGTCACGTGGTCGAGCTCGGATGCCAAACTCTGAATATGTTTT ACTTGTTAGAAGGGGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGG GCAAATGATGCGGGAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCACTAGAAAA CACCTTGTTGCAGGGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTGACTATGAA CTCAAGTGTCCAGTTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAGTCTGTTTT ATGTACCTTAAATTATGGTTTCCTTCTGTTTCATATCACAAATCATTTTCTGGCACAAGT ATCTTATGTTTCTCACGGATAATATCTCTGTCTCAGATACTTTACACCTCTTCCGAGATT CATTATTGACAAGGAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGCCCTGTGCA GACTGTTAATGCAGAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTTAAGGCCTG CCGAGAATTACACGCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTTGGTTTTCC ATGTGAAGAAGAACCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCTGTGTACTT CCCAGAGGAATTTGTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATATTATTGCTA TAAGATTTCAGTAGAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATACTTCTAGC TGTGAAATGTGATTTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTTGGTGCGCA AGATAATGCTAGTCTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAAGAACAGGT AGTTATGGCCAGAAGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAAGACCATTC TGAGGTCAGTAATGCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGAATTGTCTA CCTGCTGCTACCCTTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTCTCGACCTC GCAAGTGTATGTTGGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAACAAGTTGA TTTACTGCAAACAAAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCCATTGTTTG CACCCCTCATAATAGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAATTCCAAATC TCTTCTGCACCTTCGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAGACTAGGCA TGGACTCAGTCTAACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCTGTTGAAGT GCGGAATTTCCTCCACAAGCGCCATTATAAAAATAAAAAAGAATCGTGCACTTCACATGG TGTTGAGTTGCCACCTGAGCTCTGCAGACTAGTCATGTCACCAGTCTCTACTAATACTTT GTACAGCTTCTCGATTATTCCTTCTGTAATGTACCGCATCCAGTGTCTGCTTCTTTCTGC AAAGTTGAAAGATCAACTGGGCCCAATAATGCAGCAGTTTGCCATACCAGCTCTGAAGAT TCTAGAAGCAGTAACAACCAAGGAATGCCAAGAGGAATTTTCACAGGAATCATTAGAAAC CCTTGGGGATTCTTTCCTCAAGTACATCGCCACGCAACATCTGTATGTCAAACACAAGCT TCAGCATGAGGGGACATTAACCAAGATGAAGAAAAACTTAATCTCGAATGCAGCTCTATG CCAGCTGGCCTGCAACAACAATCTTGTGGGTTACATTCAAGGGGAAGAGTTTAACCCAAA AGGTTGGATCATTCCAGGGCTTGGTTATGACATGTGTGGTAACAGCAAATTTTCCTTTTT AAGCTCCAATGATATGCACACTTTGAGGAAAATGTCTGTTAGAAGTAAGAGAATAGCAGA TACAGTTGAGGCATTGATTGGAGCCTACCTTGGTGCTGCGGGAGAACAGGCTGCATTTGT TTTCCTAAAATCATTAGGATTGGATATAGGATTTCACAGCACTATTCCACTTGAAAGGAA GATTGTATTAAAATCTGAAAAGTTCATCAACGTGAGAAGTTTGGAAATGATTCTTGGTTA TGAGTTCAAGGATACTTCATTGTTGGTGGAAGCATTGACACATGGGTCATACCAGACTGC TGGCACTACTGCATGCTATCAGAGGCTTGAGTTTCTCGGAGACGCTGTGTTGGACCATCT CTTCACTATATATTTCTACAATAAGTACCCTGAATGTACTCCAGAATTGTTGACAGATCT TAGATCTGCTTCCGTTAACAACAATTGCTATGCGCATGCAGCTGCTAAAGCAGGACTAAA CAAGCACATTCTTCATTCGTCATTGCCATTGCACGGAAGGATGGCTTACTACTTTGAGAA TTTTACTAAGCACCGATTTACAGGTCCATCACATGGTTGGGAAGCTGGCATTGGTCTACC CAAGGTTCTTGGGGATGTTATTGAATCATTAGCCGGTGCCATTTATCTTGACAGCAAGTA TGACAAAGAGGTGGTTTGGAGAAGCATGAAAAAGCTATTGGAGCCTCTTGCGACACCGGA GACGGTTGAGCGTGACCCAGTGAAACTGCTGCAGGAATTTTGTGATCGCAGGTCTTATAG CAGGTCTTACACAAAGGTCCAGAAAGATGGAGTGTCTTCGGTGGTTGGGGAGGTACAGGT AGAAGGGACTACCTACTCAGCAACTGGAACTGGCCCTGATAAGGTTGTCGCAAAAAAGCT TGCAGCGAAGTTGCTGCTAGAAGATCTGAAGGCTATAGTACCATGACACGCTTGCATTTG CAGATGATGCAATACTGTATAGCTCCTTCCGACTTCACTTGTATTGTGACTAGCCTGTAG GTAGCCTTTTGAAGTTTTTGTGGGAGTATGCGTGTACTTGACAAATGTGCAGCTCAATCA TTGCTTGTGAATATTCAGACTATTGAACTGCACATCTGTGAAGTACGGGCATCGTCTCTC AGAACCATGGTACAGACGATAATGCTACAGTATCCTTAGACTTCTACTTGTACAGTTGTA AGCACAATCTTGAGTGGAAAGCTGGAATATCTTTTTCTCTCCATCGGGCAGTGCAGTGCA TGTATCTTTTATTTTTTGAGCGGGGGTACCTTTTGTAGGGCTGG