- Transcript HORVU5Hr1G019300.24
- Transcript IDHORVU5Hr1G019300.24
- Gene IDHORVU5Hr1G019300
Barley RTD
Exon Structure of HORVU5Hr1G019300.24
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84493221 | 84492317 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g14610.3 | +1 | 5e-33 | 125 | 68/92 (74%) | protein|DCL2, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g15440.2.p | +1 | 1e-34 | 134 | 78/91 (86%) | pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (905 bp)
>HORVU5Hr1G019300.24 905 150831_barley_pseudomolecules AACAACTATTGTTGAGTCTTGAGACGTGGTTGCTCTATTTGTTTTCTAAAGTGGATATAG TTTCTAGATTTTCATAAGCATCCTATGTTTTGTCCACTTGTGGATTCTTTTCAATTCTGT CACATAACTGACGTTTTGCCTGCTGCTTATTTGCAAACGAAACAGGTTCTTGGGGATGTT ATTGAATCATTAGCCGGTGCCATTTATCTTGACAGCAAGTATGACAAAGAGGTGGTTTGG AGAAGCATGAAAAAGCTATTGGAGCCTCTTGCGACACCGGAGACGGTTGAGCGTGACCCA GTGAAACTGCTGCAGGAATTTTGTGATCGCAGGTCTTATAGCAGGTCTTACACAAAGGTC CAGAAAGATGGAGTGTCTTCGGTGGTTGGGGAGGTACAGGTAGAAGGGACTACCTACTCA GCAACTGGAACTGGCCCTGATAAGGTTGTCGCAAAAAAGCTTGCAGCGAAGTTGCTGCTA GAAGATCTGAAGGCTATAGTACCATGACACGCTTGCATTTGCAGATGATGCAATACTGTA TAGCTCCTTCCGACTTCACTTGTATTGTGACTAGCCTGTAGGTAGCCTTTTGAAGTTTTT GTGGGAGTATGCGTGTACTTGACAAATGTGCAGCTCAATCATTGCTTGTGAATATTCAGA CTATTGAACTGCACATCTGTGAAGTACGGGCATCGTCTCTCAGAACCATGGTACAGACGA TAATGCTACAGTATCCTTAGACTTCTACTTGTACAGTTGTAAGCACAATCTTGAGTGGAA AGCTGGAATATCTTTTTCTCTCCATCGGGCAGTGCAGTGCATGTATCTTTTATTTTTTGA GCGGGGGTACCTTTTGTAGGGCTGGTAATTGTTTTTTTTAAATGGCAGGATGCATTGTTA AGAAG