- Transcript HORVU5Hr1G019300.23
- Transcript IDHORVU5Hr1G019300.23
- Gene IDHORVU5Hr1G019300
Barley RTD
Exon Structure of HORVU5Hr1G019300.23
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84483365 | 84483167 | + |
| chr5H | 2 | 84483994 | 84483785 | + |
| chr5H | 3 | 84490180 | 84489767 | + |
| chr5H | 4 | 84491799 | 84491518 | + |
| chr5H | 5 | 84493126 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +2 | 0.0 | 663 | 333/454 (73%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.2 @ TAIR |
+2 | 4e-119 | 383 | 203/425 (48%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525 REVERSE LENGTH=1374 |
| BRACH PP3 | Bradi1g21030.3.p | +2 | 0.0 | 733 | 380/458 (83%) | pacid=32804149 transcript=Bradi1g21030.3 locus=Bradi1g21030 ID=Bradi1g21030.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1750 bp)
>HORVU5Hr1G019300.23 1750 150831_barley_pseudomolecules AGAATCGTGCACTTCACATGGTGTTGAGTTGCCACCTGAGCTCTGCAGACTAGTCATGTC ACCAGTCTCTACTAATACTTTGTACAGCTTCTCGATTATTCCTTCTGTAATGTACCGCAT CCAGTGTCTGCTTCTTTCTGCAAAGTTGAAAGATCAACTGGGCCCAATAATGCAGCAGTT TGCCATACCAGCTCTGAAGATTCTAGAAGCAGTAACAACCAAGGAATGCCAAGAGGAATT TTCACAGGAATCATTAGAAACCCTTGGGGATTCTTTCCTCAAGTACATCGCCACGCAACA TCTGTATGTCAAACACAAGCTTCAGCATGAGGGGACATTAACCAAGATGAAGAAAAACTT AATCTCGAATGCAGCTCTATGCCAGCTGGCCTGCAACAACAATCTTGTGGGTTACATTCA AGGGGAAGAGTTTAACCCAAAAGGTTGGATCATTCCAGGGCTTGGTTATGACATGTGTGG TAACAGCAAATTTTCCTTTTTAAGCTCCAATGATATGCACACTTTGAGGAAAATGTCTGT TAGAAGTAAGAGAATAGCAGATACAGTTGAGGCATTGATTGGAGCCTACCTTGGTGCTGC GGGAGAACAGGCTGCATTTGTTTTCCTAAAATCATTAGGATTGGATATAGGATTTCACAG CACTATTCCACTTGAAAGGAAGATTGTATTAAAATCTGAAAAGTTCATCAACGTGAGAAG TTTGGAAATGATTCTTGGTTATGAGTTCAAGGATACTTCATTGTTGGTGGAAGCATTGAC ACATGGGTCATACCAGACTGCTGGCACTACTGCATGCTATCAGAGGCTTGAGTTTCTCGG AGACGCTGTGTTGGACCATCTCTTCACTATATATTTCTACAATAAGTACCCTGAATGTAC TCCAGAATTGTTGACAGATCTTAGATCTGCTTCCGTTAACAACAATTGCTATGCGCATGC AGCTGCTAAAGCAGGACTAAACAAGCACATTCTTCATTCGTCATTGCCATTGCACGGAAG GATGGCTTACTACTTTGAGAATTTTACTAAGCACCGATTTACAGGTCCATCACATGGTTG GGAAGCTGGCATTGGTCTACCCAAGGTTCTTGGGGATGTTATTGAATCATTAGCCGGTGC CATTTATCTTGACAGCAAGTATGACAAAGAGGTGGTTTGGAGAAGCATGAAAAAGCTATT GGAGCCTCTTGCGACACCGGAGACGGTTGAGCGTGACCCAGTGAAACTGCTGCAGGAATT TTGTGATCGCAGGTCTTATAGCAGGTCTTACACAAAGGTCCAGAAAGATGGAGTGTCTTC GGTGGTTGGGGAGGTACAGGTAGAAGGGACTACCTACTCAGCAACTGGAACTGGCCCTGA TAAGGTTGTCGCAAAAAAGCTTGCAGCGAAGTTGCTGCTAGAAGATCTGAAGGCTATAGT ACCATGACACGCTTGCATTTGCAGATGATGCAATACTGTATAGCTCCTTCCGACTTCACT TGTATTGTGACTAGCCTGTAGGTAGCCTTTTGAAGTTTTTGTGGGAGTATGCGTGTACTT GACAAATGTGCAGCTCAATCATTGCTTGTGAATATTCAGACTATTGAACTGCACATCTGT GAAGTACGGGCATCGTCTCTCAGAACCATGGTACAGACGATAATGCTACAGTATCCTTAG ACTTCTACTTGTACAGTTGTAAGCACAATCTTGAGTGGAAAGCTGGAATATCTTTTTCTC TCCATCGGGC