- Transcript HORVU5Hr1G019300.22
- Transcript IDHORVU5Hr1G019300.22
- Gene IDHORVU5Hr1G019300
Barley RTD
Exon Structure of HORVU5Hr1G019300.22
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84479142 | 84478222 | + |
| chr5H | 2 | 84480117 | 84479843 | + |
| chr5H | 3 | 84480655 | 84480237 | + |
| chr5H | 4 | 84480831 | 84480728 | + |
| chr5H | 5 | 84483365 | 84483169 | + |
| chr5H | 6 | 84483994 | 84483785 | + |
| chr5H | 7 | 84490180 | 84489767 | + |
| chr5H | 8 | 84491799 | 84491518 | + |
| chr5H | 9 | 84493138 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +3 | 0.0 | 1248 | 626/909 (69%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+3 | 0.0 | 610 | 362/891 (41%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.2.p | +3 | 0.0 | 1336 | 683/908 (75%) | pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3479 bp)
>HORVU5Hr1G019300.22 3479 150831_barley_pseudomolecules GGAAACCGCAGGTAACCATAACATGATAAGGATCTGTTTTCAATCGAGACAACTGTTCAT ATTTGAGTAGAAAACCGTCCGACTTTTTGCTCGGTTATTGGTGGAAACTAGTCAGCACTT ATGATTATTGTCAGTGAGCTGTGAATTCTATTCCTACTGATTACATTTCTCTATTTAGCT ATACAAAAAATGTGGACTCGTGCTACAGTGGAAAAATCGCTATACTCAAGTTGTCTTAAG TTGATTTATTAGTACAGTTTCCTCTTGTATTGCAAAAAAACCCTACTTTACCTTTGTTCT CATCATCACTTCTAGCTCTTTTTGGCATGCTACGTAACATGATGATGCAATGCTTGTGTT TCTGTATCAGGGGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGC AAATGATGCGGGAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCACTAGAAAACA CCTTGTTGCAGGGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTGACTATGAACT CAAGTGTCCAGTTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAGTCTGTTTTAT GTACCTTAAATTATGGTTTCCTTCTGTTTCATATCACAAATCATTTTCTGGCACAAGTAT CTTATGTTTCTCACGGATAATATCTCTGTCTCAGATACTTTACACCTCTTCCGAGATTCA TTATTGACAAGGAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGCCCTGTGCAGA CTGTTAATGCAGAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTTAAGGCCTGCC GAGAATTACACGCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTTGGTTTTCCAT GTGAAGAAGAACCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCTGTGTACTTCC CAGAGGAATTTGTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATATTATTGCTATA AGATTTCAGTAGAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATACTTCTAGCTG TGAAATGTGATTTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTTGGTGCGCAAG ATAATGCTAGTCTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAAGAACAGGTAG TTATGGCCAGAAGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAAGACCATTCTG AGGTCAGTAATGCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGAATTGTCTACC TGCTGCTACCCTTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTCTCGACCTCGC AAGTGTATGTTGGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAACAAGTTGATT TACTGCAAACAAAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCCATTGTTTGCA CCCCTCATAATAGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAATTCCAAATCTC TTCTGCACCTTCGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAGACTAGGCATG GACTCAGTCTAACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCTGTTGAAGTGC GGAATTTCCTCCACAAGCGCCATTATAAAAATAAAAAAGAATCGTGCACTTCACATGGTG TTGAGTTGCCACCTGAGCTCTGCAGACTAGTCATGTCACCAGTCTCTACTAATACTTTGT ACAGCTTCTCGATTATTCCTTCTGTAATGTACCGCATCCAGTGTCTGCTTCTTTCTGCAA AGTTGAAAGATCAACTGGGCCCAATAATGCAGCAGTTTGCCATACCAGCTCTGAAGATTC TAGAAGCAGTAACAACCAAGGAATGCCAAGAGGAATTTTCACAGGAATCATTAGAAACCC TTGGGGATTCTTTCCTCAAGTACATCGCCACGCAACATCTGTATGTCAAACACAAGCTTC AGCATGAGGGGACATTAACCAAGATGAAGAAAAACTTAATCTCGAATGCAGCTCTATGCC AGCTGGCCTGCAACAACAATCTTGTGGGTTACATTCAAGGGGAAGAGTTTAACCCAAAAG GTTGGATCATTCCAGGGCTTGGTTATGACATGTGTGGTAACAGCAAATTTTCCTTTTTAA GCTCCAATGATATGCACACTTTGAGGAAAATGTCTGTTAGAAGTAAGAGAATAGCAGATA CAGTTGAGGCATTGATTGGAGCCTACCTTGGTGCTGCGGGAGAACAGGCTGCATTTGTTT TCCTAAAATCATTAGGATTGGATATAGGATTTCACAGCACTATTCCACTTGAAAGGAAGA TTGTATTAAAATCTGAAAAGTTCATCAACGTGAGAAGTTTGGAAATGATTCTTGGTTATG AGTTCAAGGATACTTCATTGTTGGTGGAAGCATTGACACATGGGTCATACCAGACTGCTG GCACTACTGCATGCTATCAGAGGCTTGAGTTTCTCGGAGACGCTGTGTTGGACCATCTCT TCACTATATATTTCTACAATAAGTACCCTGAATGTACTCCAGAATTGTTGACAGATCTTA GATCTGCTTCCGTTAACAACAATTGCTATGCGCATGCAGCTGCTAAAGCAGGACTAAACA AGCACATTCTTCATTCGTCATTGCCATTGCACGGAAGGATGGCTTACTACTTTGAGAATT TTACTAAGCACCGATTTACAGGTCCATCACATGGTTGGGAAGCTGGCATTGGTCTACCCA AGGTTCTTGGGGATGTTATTGAATCATTAGCCGGTGCCATTTATCTTGACAGCAAGTATG ACAAAGAGGTGGTTTGGAGAAGCATGAAAAAGCTATTGGAGCCTCTTGCGACACCGGAGA CGGTTGAGCGTGACCCAGTGAAACTGCTGCAGGAATTTTGTGATCGCAGGTCTTATAGCA GGTCTTACACAAAGGTCCAGAAAGATGGAGTGTCTTCGGTGGTTGGGGAGGTACAGGTAG AAGGGACTACCTACTCAGCAACTGGAACTGGCCCTGATAAGGTTGTCGCAAAAAAGCTTG CAGCGAAGTTGCTGCTAGAAGATCTGAAGGCTATAGTACCATGACACGCTTGCATTTGCA GATGATGCAATACTGTATAGCTCCTTCCGACTTCACTTGTATTGTGACTAGCCTGTAGGT AGCCTTTTGAAGTTTTTGTGGGAGTATGCGTGTACTTGACAAATGTGCAGCTCAATCATT GCTTGTGAATATTCAGACTATTGAACTGCACATCTGTGAAGTACGGGCATCGTCTCTCAG AACCATGGTACAGACGATAATGCTACAGTATCCTTAGACTTCTACTTGTACAGTTGTAAG CACAATCTTGAGTGGAAAGCTGGAATATCTTTTTCTCTCCATCGGGCAGTGCAGTGCAT