- Transcript HORVU5Hr1G019300.21
- Transcript IDHORVU5Hr1G019300.21
- Gene IDHORVU5Hr1G019300
Barley RTD
Exon Structure of HORVU5Hr1G019300.21
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84477467 | 84477279 | + |
| chr5H | 2 | 84477710 | 84477550 | + |
| chr5H | 3 | 84478810 | 84478592 | + |
| chr5H | 4 | 84479142 | 84478916 | + |
| chr5H | 5 | 84480117 | 84479843 | + |
| chr5H | 6 | 84480655 | 84480237 | + |
| chr5H | 7 | 84480836 | 84480728 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +1 | 0.0 | 778 | 374/531 (70%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+1 | 2e-122 | 390 | 224/542 (41%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.3.p | +1 | 0.0 | 818 | 391/530 (74%) | pacid=32792175 transcript=Bradi1g15440.3 locus=Bradi1g15440 ID=Bradi1g15440.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1599 bp)
>HORVU5Hr1G019300.21 1599 150831_barley_pseudomolecules ATGCAAGACATAAGATGCATTGTATTTGTCGAGAGAGTTGTTACAAGCATTGTGTTGGAG TCTCTCCTGTCCATTATCAATCAAATGCCTGGGTGGATTATTAAACACATTGCAGGAAAC AGACCTATGTTGCACAACCAGAGTAGAAATAAACAAACGGAAATTGTTGACGCCTTTAAA GGAGGAAAGGTACATATAATTGTGACCACACAAGTATTGGAGGAGGGGCTGAATGTGCCA GGTTGTCACTTAGTAATTCGCTTTGATCCACCAACGACTGGGCGCAGCTTTATACAGTCA CGTGGTCGAGCTCGGATGCCAAACTCTGAATATGTTTTACTTGTTAGAAGGGGGGATGCA GAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATGATGCGGGAAGCATCT CTGAAGCTTGCATCTACTATGTGTCAACCACTAGAAAACACCTTGTTGCAGGGAGAATAT TACCGTGTTGAATCTACTGGAGCAACCGTGACTATGAACTCAAGTGTCCAGTTGATTTAT TTTTTCTGCTCGAAGCTCCCATCTGATGAATACTTTACACCTCTTCCGAGATTCATTATT GACAAGGAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGCCCTGTGCAGACTGTT AATGCAGAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTTAAGGCCTGCCGAGAA TTACACGCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTTGGTTTTCCATGTGAA GAAGAACCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCTGTGTACTTCCCAGAG GAATTTGTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATATTATTGCTATAAGATT TCAGTAGAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATACTTCTAGCTGTGAAA TGTGATTTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTTGGTGCGCAAGATAAT GCTAGTCTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAAGAACAGGTAGTTATG GCCAGAAGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAAGACCATTCTGAGGTC AGTAATGCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGAATTGTCTACCTGCTG CTACCCTTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTCTCGACCTCGCAAGTG TATGTTGGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAACAAGTTGATTTACTG CAAACAAAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCCATTGTTTGCACCCCT CATAATAGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAATTCCAAATCTCTTCTG CACCTTCGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAGACTAGGCATGGACTC AGTCTAACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCTGTTGAAGTGCGGAAT TTCCTCCACAAGCGCCATTATAAAAATAAAAAAGGTTAG