- Transcript HORVU5Hr1G019300.20
- Transcript IDHORVU5Hr1G019300.20
- Gene IDHORVU5Hr1G019300
Barley RTD
Exon Structure of HORVU5Hr1G019300.20
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84477467 | 84476987 | + |
| chr5H | 2 | 84477710 | 84477550 | + |
| chr5H | 3 | 84479142 | 84478592 | + |
| chr5H | 4 | 84480117 | 84479843 | + |
| chr5H | 5 | 84480655 | 84480237 | + |
| chr5H | 6 | 84480831 | 84480728 | + |
| chr5H | 7 | 84483365 | 84483169 | + |
| chr5H | 8 | 84483994 | 84483785 | + |
| chr5H | 9 | 84490180 | 84489767 | + |
| chr5H | 10 | 84491799 | 84491518 | + |
| chr5H | 11 | 84492840 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +2 | 0.0 | 1422 | 710/1027 (69%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+2 | 0.0 | 747 | 429/1009 (43%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.2.p | +2 | 0.0 | 1515 | 767/1026 (75%) | pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3453 bp)
>HORVU5Hr1G019300.20 3453 150831_barley_pseudomolecules TTTGACTCGGTGACACTTTTGGGTGGCATTCTAGTCGTAATTTCAAGAAACCCCAACTTC TAGCTTTTGCAAAGCTGGGCCGGCGCTGCTTCTCGTCTTCGACAAATTTGCATGCAGTAA TCCTCGTCTCTGCGAATCGGGCTTTTCGGAGAAGAACCATTCGAGCTGGCTTCTTGGAGT GATTTTAGGAAGCTAAACAACACTTCTTTTTGTGCCTCTGTAGTTTCTCATTAAGTTTAT TTTGTTTTAGTAGAATAATCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGCACATGCAAGA CATAAGATGCATTGTATTTGTCGAGAGAGTTGTTACAAGCATTGTGTTGGAGTCTCTCCT GTCCATTATCAATCAAATGCCTGGGTGGATTATTAAACACATTGCAGGAAACAGACCTAT GTTGCACAACCAGAGTAGAAATAAACAAACGGAAATTGTTGACGCCTTTAAAGGAGGAAA GGTACATATAATTGTGACCACACAAGTATTGGAGGAGGGGCTGAATGTGCCAGGTTGTCA CTTAGTAATTCGCTTTGATCCACCAACGACTGGGCGCAGCTTTATACAGTCACGTGGTCG AGCTCGGATGCCAAACTCTGAATATGTTTTACTTGTTAGAAGGGGGGATGCAGAGGCCCT CTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATGATGCGGGAAGCATCTCTGAAGCT TGCATCTACTATGTGTCAACCACTAGAAAACACCTTGTTGCAGGGAGAATATTACCGTGT TGAATCTACTGGAGCAACCGTGACTATGAACTCAAGTGTCCAGTTGATTTATTTTTTCTG CTCGAAGCTCCCATCTGATGAGTCTGTTTTATGTACCTTAAATTATGGTTTCCTTCTGTT TCATATCACAAATCATTTTCTGGCACAAGTATCTTATGTTTCTCACGGATAATATCTCTG TCTCAGATACTTTACACCTCTTCCGAGATTCATTATTGACAAGGAACTACGTACTTGCAC CTTGTACCTTCCCAATAGCAGCCCTGTGCAGACTGTTAATGCAGAAGGAGAAGTTTCTGC CCTCAAAAAGGCAGTTTGTCTTAAGGCCTGCCGAGAATTACACGCTGTCGGCGCCCTAAC AGATTATCTGTTACCAGAATTTGGTTTTCCATGTGAAGAAGAACCCGACATTGTTGTTGA GAAATACCAACACGAGCAGCCTGTGTACTTCCCAGAGGAATTTGTGTACAATTGGTCATC CTTTTCTCGTCTTGGAATATATTATTGCTATAAGATTTCAGTAGAAGGGTGCTTGAAAAC AACTTATTGTCCAAATGACATACTTCTAGCTGTGAAATGTGATTTGGGACCAGAGTTTGT CTCTACCTCACTTCAATTGTTTGGTGCGCAAGATAATGCTAGTCTTGCCATGAAATATGT GGGAATCATTCATCTGAATCAAGAACAGGTAGTTATGGCCAGAAGGTTTCAGACTACTAT TCTTTCTTTGCTTATTAATAAAGACCATTCTGAGGTCAGTAATGCTGTTAAATACTCCCA TGAGATGCAAGTGTCCATTGGAATTGTCTACCTGCTGCTACCCTTAGTTTCTGGCAAAGT TGATTGGTGCAGTATCAAGTTCTCGACCTCGCAAGTGTATGTTGGCAGTAACAAGGATAT CAGACATTGCCATTCTTGTAAACAAGTTGATTTACTGCAAACAAAAGATGGTCCTCTGTG CAGATGCATGCTTGAAAGTTCCATTGTTTGCACCCCTCATAATAGCAAATTCTATGCTGT TAATGGGTTCCTTGACTTAAATTCCAAATCTCTTCTGCACCTTCGTGATGGCAGTGCCCT TACCTACATAAACTATTTCAAGACTAGGCATGGACTCAGTCTAACACATGAAAATCAACC CCTGTTGGCAGCCAGGAGTCCTGTTGAAGTGCGGAATTTCCTCCACAAGCGCCATTATAA AAATAAAAAAGAATCGTGCACTTCACATGGTGTTGAGTTGCCACCTGAGCTCTGCAGACT AGTCATGTCACCAGTCTCTACTAATACTTTGTACAGCTTCTCGATTATTCCTTCTGTAAT GTACCGCATCCAGTGTCTGCTTCTTTCTGCAAAGTTGAAAGATCAACTGGGCCCAATAAT GCAGCAGTTTGCCATACCAGCTCTGAAGATTCTAGAAGCAGTAACAACCAAGGAATGCCA AGAGGAATTTTCACAGGAATCATTAGAAACCCTTGGGGATTCTTTCCTCAAGTACATCGC CACGCAACATCTGTATGTCAAACACAAGCTTCAGCATGAGGGGACATTAACCAAGATGAA GAAAAACTTAATCTCGAATGCAGCTCTATGCCAGCTGGCCTGCAACAACAATCTTGTGGG TTACATTCAAGGGGAAGAGTTTAACCCAAAAGGTTGGATCATTCCAGGGCTTGGTTATGA CATGTGTGGTAACAGCAAATTTTCCTTTTTAAGCTCCAATGATATGCACACTTTGAGGAA AATGTCTGTTAGAAGTAAGAGAATAGCAGATACAGTTGAGGCATTGATTGGAGCCTACCT TGGTGCTGCGGGAGAACAGGCTGCATTTGTTTTCCTAAAATCATTAGGATTGGATATAGG ATTTCACAGCACTATTCCACTTGAAAGGAAGATTGTATTAAAATCTGAAAAGTTCATCAA CGTGAGAAGTTTGGAAATGATTCTTGGTTATGAGTTCAAGGATACTTCATTGTTGGTGGA AGCATTGACACATGGGTCATACCAGACTGCTGGCACTACTGCATGCTATCAGAGGCTTGA GTTTCTCGGAGACGCTGTGTTGGACCATCTCTTCACTATATATTTCTACAATAAGTACCC TGAATGTACTCCAGAATTGTTGACAGATCTTAGATCTGCTTCCGTTAACAACAATTGCTA TGCGCATGCAGCTGCTAAAGCAGGACTAAACAAGCACATTCTTCATTCGTCATTGCCATT GCACGGAAGGATGGCTTACTACTTTGAGAATTTTACTAAGCACCGATTTACAGGTCCATC ACATGGTTGGGAAGCTGGCATTGGTCTACCCAAGGTTCTTGGGGATGTTATTGAATCATT AGCCGGTGCCATTTATCTTGACAGCAAGTATGACAAAGAGGTGGTTTGGAGAAGCATGAA AAAGCTATTGGAGCCTCTTGCGACACCGGAGACGGTTGAGCGTGACCCAGTGAAACTGCT GCAGGAATTTTGTGATCGCAGGTCTTATAGCAGGTCTTACACAAAGGTCCAGAAAGATGG AGTGTCTTCGGTGGTTGGGGAGGTACAGGTAGAAGGGACTACCTACTCAGCAACTGGAAC TGGCCCTGATAAGGTTGTCGCAAAAAAGCTTGCAGCGAAGTTGCTGCTAGAAGATCTGAA GGCTATAGTACCATGACACGCTTGCATTTGCAG