- Transcript HORVU5Hr1G019300.2
- Transcript IDHORVU5Hr1G019300.2
- Gene IDHORVU5Hr1G019300
Barley RTD
Exon Structure of HORVU5Hr1G019300.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84450462 | 84450119 | + |
| chr5H | 2 | 84450961 | 84450535 | + |
| chr5H | 3 | 84451613 | 84451355 | + |
| chr5H | 4 | 84451927 | 84451787 | + |
| chr5H | 5 | 84473806 | 84473681 | + |
| chr5H | 6 | 84474019 | 84473884 | + |
| chr5H | 7 | 84476025 | 84475935 | + |
| chr5H | 8 | 84477467 | 84477275 | + |
| chr5H | 9 | 84477710 | 84477550 | + |
| chr5H | 10 | 84478810 | 84478592 | + |
| chr5H | 11 | 84479074 | 84478916 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +2 | 0.0 | 612 | 301/433 (70%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+2 | 7e-159 | 354 | 197/430 (46%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.3.p | +2 | 0.0 | 670 | 320/425 (75%) | pacid=32792175 transcript=Bradi1g15440.3 locus=Bradi1g15440 ID=Bradi1g15440.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2256 bp)
>HORVU5Hr1G019300.2 2256 150831_barley_pseudomolecules GCAATGGTCCCGAGCGGGTCTCCTCCCTTCCCCCCACTTCCTTTCGAGTCAAAAGGTGAA CCCGAAGCGAAGCGGCCAAGCAGCAAAACCTTCGCCCCTAAGCTCACCAAATCAAACCCC ACGAGCGCTCGACACAGATTCACCCGTGCGCCTCGGCAGCAGCCCAAGCGTACTCGCCGC CTCCGCCGCCTCGCTGCCGCCGCGCCGCCGATTTCGTTCTCGCGCCAGCCCAGAATCTCA TCAGACACCACCATGGATGCCGCCGCCGCCGCCGCCCCCCCCGCCGCGGACTCAGCCGTG ACAGAGGAAGCACACAAGGAGGATCCGGAGATCGTAGCGAGATGGTACCAGCTGGAGGCG CTGGAGCGGGCCATGAGCGGGAACACGGTGGCTTTCCTGGATACGGGGGCCGGGAAGACG CTCATCGCGGGGTTGCTGCTGCGCGCCTACGCGCACCTCGTGCGGAAGCCGGCGCGGGAA TTCGCCGTCTTCCTCGTCCCCACCCGCGTGCTCGTGGAGCAGCAGGCACGGGTCGTCGAG GCGCATACCGACCTCCGCGTCTCCAAGTTCACCGGCGACATGGGCGTCGACTTCTGGGAC GCCGCAATCTGGCGCCGCGTGGTGGACGACGCCGAGGTGCTTGTCATGACGCCGCAGATC CTCCTCGACAACCTCCGACACAGCTTCTTCCGCCTCCAGGACATCGCGTTGCTCATCTTC GACGAGTGCCACCGCGCCAAGGGCAACTCCCCGTATGCGTGCATTCTCAAGGAATTCTAC CACCCTGTAATGAATTCTAGACCACGGGGCCCTCTGCCGAGGATATTTGGGATGACTGCT TCGCCCACAGATGCAAAAAGTAAGGACGAAGATGTGAACTTGTATATGTGTTTTACATCC TCAAGGACTATTTTTTGAACAAACATCCTCTCAGTTCGACCAAATCTGTCACACTATTCC TTCCATAGATCAGCTGCAAGAGAGCTATTCCAAACGAATCGTCGAACTGGAGAATCTATT GAACTCAAAGGTGTACACAGTTGACAATGAATCGGCTTTATCGGAATATATACCATTTGC CACTACGAGGATTGTGGAGTACGATGATTCTATCATCCCATCCAACTCACATAACCATAT TAACAGTTGTTTGGACAGGTTGCAAGAGAAGCATTTAAAAGTCCTCAAGGCAAATCTACA TGGATCGTCTCGGAAAAATGCGAAGAAAGGGATATCAAAATTACACAAGGCATTCTTATA TTGCACGGCTAATCTTGGAGTATGGCTAGCGGCAAAGGCTGCTGAGATACACTCAACAAC TAACGAACAATTCTTATCTTTCTGGGGTGAAGAACTGGATAAGAATGTTGAAGGCTTTGT TAGAAGCTATAGTGAAGAAGTATACAGGGAACTCTCATGTTTTTCAGAGAGAGGTCATAT TGGTAAAGATTTTGAAGCTGATTTGCAAGATGGGTTATTGACACCTAAAGTTCATTGTCT TGTTCAGTTTCTTCTGGAATACAGGCACATGCAAGACATAAGATGCATTGTATTTGTCGA GAGAGTTGTTACAAGCATTGTGTTGGAGTCTCTCCTGTCCATTATCAATCAAATGCCTGG GTGGATTATTAAACACATTGCAGGAAACAGACCTATGTTGCACAACCAGAGTAGAAATAA ACAAACGGAAATTGTTGACGCCTTTAAAGGAGGAAAGGTACATATAATTGTGACCACACA AGTATTGGAGGAGGGGCTGAATGTGCCAGGTTGTCACTTAGTAATTCGCTTTGATCCACC AACGACTGGGCGCAGCTTTATACAGTCACGTGGTCGAGCTCGGATGCCAAACTCTGAATA TGTTTTACTTGTTAGAAGGGGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGC AAGCGGGCAAATGATGCGGGAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCACT AGAAAACACCTTGTTGCAGGGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTGAC TATGAACTCAAGTGTCCAGTTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAATA CTTTACACCTCTTCCGAGATTCATTATTGACAAGGAACTACGTACTTGCACCTTGTACCT TCCCAATAGCAGCCCTGTGCAGACTGTTAATGCAGAAGGAGAAGTTTCTGCCCTCAAAAA GGCAGTTTGTCTTAAGGCCTGCCGAGAATTACACGC