- Transcript HORVU5Hr1G019300.19
- Transcript IDHORVU5Hr1G019300.19
- Gene IDHORVU5Hr1G019300
Barley RTD
Exon Structure of HORVU5Hr1G019300.19
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84473806 | 84473682 | + |
| chr5H | 2 | 84474019 | 84473884 | + |
| chr5H | 3 | 84476025 | 84475934 | + |
| chr5H | 4 | 84477467 | 84477275 | + |
| chr5H | 5 | 84477710 | 84477550 | + |
| chr5H | 6 | 84479142 | 84478592 | + |
| chr5H | 7 | 84480117 | 84479843 | + |
| chr5H | 8 | 84480655 | 84480237 | + |
| chr5H | 9 | 84480831 | 84480728 | + |
| chr5H | 10 | 84483365 | 84483169 | + |
| chr5H | 11 | 84483994 | 84483785 | + |
| chr5H | 12 | 84490180 | 84489767 | + |
| chr5H | 13 | 84491799 | 84491518 | + |
| chr5H | 14 | 84493225 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +1 | 0.0 | 1477 | 737/1087 (68%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+1 | 0.0 | 767 | 452/1083 (42%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.2.p | +1 | 0.0 | 1569 | 795/1086 (73%) | pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3903 bp)
>HORVU5Hr1G019300.19 3903 150831_barley_pseudomolecules ATTTAAAAGTCCTCAAGGCAAATCTACATGGATCGTCTCGGAAAAATGCGAAGAAAGGGA TATCAAAATTACACAAGGCATTCTTATATTGCACGGCTAATCTTGGAGTATGGCTAGCGG CAAAGGCTGCTGAGATACACTCAACAACTAACGAACAATTCTTATCTTTCTGGGGTGAAG AACTGGATAAGAATGTTGAAGGCTTTGTTAGAAGCTATAGTGAAGAAGTATACAGGGAAC TCTCATGTTTTTCAGAGAGAGGGTCATATTGGTAAAGATTTTGAAGCTGATTTGCAAGAT GGGTTATTGACACCTAAAGTTCATTGTCTTGTTCAGTTTCTTCTGGAATACAGGCACATG CAAGACATAAGATGCATTGTATTTGTCGAGAGAGTTGTTACAAGCATTGTGTTGGAGTCT CTCCTGTCCATTATCAATCAAATGCCTGGGTGGATTATTAAACACATTGCAGGAAACAGA CCTATGTTGCACAACCAGAGTAGAAATAAACAAACGGAAATTGTTGACGCCTTTAAAGGA GGAAAGGTACATATAATTGTGACCACACAAGTATTGGAGGAGGGGCTGAATGTGCCAGGT TGTCACTTAGTAATTCGCTTTGATCCACCAACGACTGGGCGCAGCTTTATACAGTCACGT GGTCGAGCTCGGATGCCAAACTCTGAATATGTTTTACTTGTTAGAAGGGGGGATGCAGAG GCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATGATGCGGGAAGCATCTCTG AAGCTTGCATCTACTATGTGTCAACCACTAGAAAACACCTTGTTGCAGGGAGAATATTAC CGTGTTGAATCTACTGGAGCAACCGTGACTATGAACTCAAGTGTCCAGTTGATTTATTTT TTCTGCTCGAAGCTCCCATCTGATGAGTCTGTTTTATGTACCTTAAATTATGGTTTCCTT CTGTTTCATATCACAAATCATTTTCTGGCACAAGTATCTTATGTTTCTCACGGATAATAT CTCTGTCTCAGATACTTTACACCTCTTCCGAGATTCATTATTGACAAGGAACTACGTACT TGCACCTTGTACCTTCCCAATAGCAGCCCTGTGCAGACTGTTAATGCAGAAGGAGAAGTT TCTGCCCTCAAAAAGGCAGTTTGTCTTAAGGCCTGCCGAGAATTACACGCTGTCGGCGCC CTAACAGATTATCTGTTACCAGAATTTGGTTTTCCATGTGAAGAAGAACCCGACATTGTT GTTGAGAAATACCAACACGAGCAGCCTGTGTACTTCCCAGAGGAATTTGTGTACAATTGG TCATCCTTTTCTCGTCTTGGAATATATTATTGCTATAAGATTTCAGTAGAAGGGTGCTTG AAAACAACTTATTGTCCAAATGACATACTTCTAGCTGTGAAATGTGATTTGGGACCAGAG TTTGTCTCTACCTCACTTCAATTGTTTGGTGCGCAAGATAATGCTAGTCTTGCCATGAAA TATGTGGGAATCATTCATCTGAATCAAGAACAGGTAGTTATGGCCAGAAGGTTTCAGACT ACTATTCTTTCTTTGCTTATTAATAAAGACCATTCTGAGGTCAGTAATGCTGTTAAATAC TCCCATGAGATGCAAGTGTCCATTGGAATTGTCTACCTGCTGCTACCCTTAGTTTCTGGC AAAGTTGATTGGTGCAGTATCAAGTTCTCGACCTCGCAAGTGTATGTTGGCAGTAACAAG GATATCAGACATTGCCATTCTTGTAAACAAGTTGATTTACTGCAAACAAAAGATGGTCCT CTGTGCAGATGCATGCTTGAAAGTTCCATTGTTTGCACCCCTCATAATAGCAAATTCTAT GCTGTTAATGGGTTCCTTGACTTAAATTCCAAATCTCTTCTGCACCTTCGTGATGGCAGT GCCCTTACCTACATAAACTATTTCAAGACTAGGCATGGACTCAGTCTAACACATGAAAAT CAACCCCTGTTGGCAGCCAGGAGTCCTGTTGAAGTGCGGAATTTCCTCCACAAGCGCCAT TATAAAAATAAAAAAGAATCGTGCACTTCACATGGTGTTGAGTTGCCACCTGAGCTCTGC AGACTAGTCATGTCACCAGTCTCTACTAATACTTTGTACAGCTTCTCGATTATTCCTTCT GTAATGTACCGCATCCAGTGTCTGCTTCTTTCTGCAAAGTTGAAAGATCAACTGGGCCCA ATAATGCAGCAGTTTGCCATACCAGCTCTGAAGATTCTAGAAGCAGTAACAACCAAGGAA TGCCAAGAGGAATTTTCACAGGAATCATTAGAAACCCTTGGGGATTCTTTCCTCAAGTAC ATCGCCACGCAACATCTGTATGTCAAACACAAGCTTCAGCATGAGGGGACATTAACCAAG ATGAAGAAAAACTTAATCTCGAATGCAGCTCTATGCCAGCTGGCCTGCAACAACAATCTT GTGGGTTACATTCAAGGGGAAGAGTTTAACCCAAAAGGTTGGATCATTCCAGGGCTTGGT TATGACATGTGTGGTAACAGCAAATTTTCCTTTTTAAGCTCCAATGATATGCACACTTTG AGGAAAATGTCTGTTAGAAGTAAGAGAATAGCAGATACAGTTGAGGCATTGATTGGAGCC TACCTTGGTGCTGCGGGAGAACAGGCTGCATTTGTTTTCCTAAAATCATTAGGATTGGAT ATAGGATTTCACAGCACTATTCCACTTGAAAGGAAGATTGTATTAAAATCTGAAAAGTTC ATCAACGTGAGAAGTTTGGAAATGATTCTTGGTTATGAGTTCAAGGATACTTCATTGTTG GTGGAAGCATTGACACATGGGTCATACCAGACTGCTGGCACTACTGCATGCTATCAGAGG CTTGAGTTTCTCGGAGACGCTGTGTTGGACCATCTCTTCACTATATATTTCTACAATAAG TACCCTGAATGTACTCCAGAATTGTTGACAGATCTTAGATCTGCTTCCGTTAACAACAAT TGCTATGCGCATGCAGCTGCTAAAGCAGGACTAAACAAGCACATTCTTCATTCGTCATTG CCATTGCACGGAAGGATGGCTTACTACTTTGAGAATTTTACTAAGCACCGATTTACAGGT CCATCACATGGTTGGGAAGCTGGCATTGGTCTACCCAAGGTTCTTGGGGATGTTATTGAA TCATTAGCCGGTGCCATTTATCTTGACAGCAAGTATGACAAAGAGGTGGTTTGGAGAAGC ATGAAAAAGCTATTGGAGCCTCTTGCGACACCGGAGACGGTTGAGCGTGACCCAGTGAAA CTGCTGCAGGAATTTTGTGATCGCAGGTCTTATAGCAGGTCTTACACAAAGGTCCAGAAA GATGGAGTGTCTTCGGTGGTTGGGGAGGTACAGGTAGAAGGGACTACCTACTCAGCAACT GGAACTGGCCCTGATAAGGTTGTCGCAAAAAAGCTTGCAGCGAAGTTGCTGCTAGAAGAT CTGAAGGCTATAGTACCATGACACGCTTGCATTTGCAGATGATGCAATACTGTATAGCTC CTTCCGACTTCACTTGTATTGTGACTAGCCTGTAGGTAGCCTTTTGAAGTTTTTGTGGGA GTATGCGTGTACTTGACAAATGTGCAGCTCAATCATTGCTTGTGAATATTCAGACTATTG AACTGCACATCTGTGAAGTACGGGCATCGTCTCTCAGAACCATGGTACAGACGATAATGC TACAGTATCCTTAGACTTCTACTTGTACAGTTGTAAGCACAATCTTGAGTGGAAAGCTGG AATATCTTTTTCTCTCCATCGGGCAGTGCAGTGCATGTATCTTTTATTTTTTGAGCGGGG GTACCTTTTGTAGGGCTGGTAATTGTTTTTTTTAAATGGCAGGATGCATTGTTAAGAAGA AAA