- Transcript HORVU5Hr1G019300.18
- Transcript IDHORVU5Hr1G019300.18
- Gene IDHORVU5Hr1G019300
Barley RTD
Exon Structure of HORVU5Hr1G019300.18
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84473806 | 84473681 | + |
| chr5H | 2 | 84474019 | 84473884 | + |
| chr5H | 3 | 84477467 | 84477275 | + |
| chr5H | 4 | 84477710 | 84477550 | + |
| chr5H | 5 | 84478810 | 84478592 | + |
| chr5H | 6 | 84479142 | 84478916 | + |
| chr5H | 7 | 84479882 | 84479843 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +3 | 4e-144 | 410 | 201/280 (72%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+3 | 2e-88 | 290 | 147/279 (53%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.3.p | +3 | 9e-163 | 454 | 214/280 (76%) | pacid=32792175 transcript=Bradi1g15440.3 locus=Bradi1g15440 ID=Bradi1g15440.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1102 bp)
>HORVU5Hr1G019300.18 1102 150831_barley_pseudomolecules CATTTAAAAGTCCTCAAGGCAAATCTACATGGATCGTCTCGGAAAAATGCGAAGAAAGGG ATATCAAAATTACACAAGGCATTCTTATATTGCACGGCTAATCTTGGAGTATGGCTAGCG GCAAAGGCTGCTGAGATACACTCAACAACTAACGAACAATTCTTATCTTTCTGGGGTGAA GAACTGGATAAGAATGTTGAAGGCTTTGTTAGAAGCTATAGTGAAGAAGTATACAGGGAA CTCTCATGTTTTTCAGAGAGAGGCACATGCAAGACATAAGATGCATTGTATTTGTCGAGA GAGTTGTTACAAGCATTGTGTTGGAGTCTCTCCTGTCCATTATCAATCAAATGCCTGGGT GGATTATTAAACACATTGCAGGAAACAGACCTATGTTGCACAACCAGAGTAGAAATAAAC AAACGGAAATTGTTGACGCCTTTAAAGGAGGAAAGGTACATATAATTGTGACCACACAAG TATTGGAGGAGGGGCTGAATGTGCCAGGTTGTCACTTAGTAATTCGCTTTGATCCACCAA CGACTGGGCGCAGCTTTATACAGTCACGTGGTCGAGCTCGGATGCCAAACTCTGAATATG TTTTACTTGTTAGAAGGGGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAA GCGGGCAAATGATGCGGGAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCACTAG AAAACACCTTGTTGCAGGGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTGACTA TGAACTCAAGTGTCCAGTTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAATACT TTACACCTCTTCCGAGATTCATTATTGACAAGGAACTACGTACTTGCACCTTGTACCTTC CCAATAGCAGCCCTGTGCAGACTGTTAATGCAGAAGGAGAAGTTTCTGCCCTCAAAAAGG CAGTTTGTCTTAAGGCCTGCCGAGAATTACACGCTGTCGGCGCCCTAACAGATTATCTGT TACCAGAATTTGGTTTTCCATGTGAAGAAGAACCCGACATTGTTGTTGAGAAATACCAAC ACGAGCAGCCTGTGTACTTCCC