- Transcript HORVU5Hr1G019300.14
- Transcript IDHORVU5Hr1G019300.14
- Gene IDHORVU5Hr1G019300
Barley RTD
Exon Structure of HORVU5Hr1G019300.14
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84450462 | 84450375 | + |
| chr5H | 2 | 84450961 | 84450535 | + |
| chr5H | 3 | 84451442 | 84451355 | + |
| chr5H | 4 | 84451613 | 84451552 | + |
| chr5H | 5 | 84451927 | 84451787 | + |
| chr5H | 6 | 84461560 | 84461517 | + |
| chr5H | 7 | 84467388 | 84467330 | + |
| chr5H | 8 | 84468448 | 84468436 | + |
| chr5H | 9 | 84469714 | 84469656 | + |
| chr5H | 10 | 84471127 | 84471117 | + |
| chr5H | 11 | 84473806 | 84473681 | + |
| chr5H | 12 | 84474019 | 84473884 | + |
| chr5H | 13 | 84476028 | 84475935 | + |
| chr5H | 14 | 84477467 | 84477275 | + |
| chr5H | 15 | 84477875 | 84477810 | + |
| chr5H | 16 | 84478670 | 84478592 | + |
| chr5H | 17 | 84479142 | 84478916 | + |
| chr5H | 18 | 84480117 | 84479843 | + |
| chr5H | 19 | 84480655 | 84480237 | + |
| chr5H | 20 | 84480831 | 84480728 | + |
| chr5H | 21 | 84483365 | 84483169 | + |
| chr5H | 22 | 84483994 | 84483785 | + |
| chr5H | 23 | 84490180 | 84489767 | + |
| chr5H | 24 | 84491799 | 84491518 | + |
| chr5H | 25 | 84492808 | 84492482 | + |
| chr5H | 26 | 84492973 | 84492950 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +2 | 0.0 | 1160 | 573/800 (72%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+2 | 2e-176 | 563 | 325/783 (42%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.2.p | +2 | 0.0 | 1235 | 625/799 (78%) | pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4165 bp)
>HORVU5Hr1G019300.14 4165 150831_barley_pseudomolecules ATGCCGCCGCCGCCGCCGCCCCCCCCGCCGCGGACTCAGCCGTGACAGAGGAAGCACACA AGGAGGATCCGGAGATCGTAGCGAGATGGTACCAGCTGGAGGCGCTGGAGCGGGCCATGA GCGGGAACACGGTGGCTTTCCTGGATACGGGGGCCGGGAAGACGCTCATCGCGGGGTTGC TGCTGCGCGCCTACGCGCACCTCGTGCGGAAGCCGGCGCGGGAATTCGCCGTCTTCCTCG TCCCCACCCGCGTGCTCGTGGAGCAGCAGGCACGGGTCGTCGAGGCGCATACCGACCTCC GCGTCTCCAAGTTCACCGGCGACATGGGCGTCGACTTCTGGGACGCCGCAATCTGGCGCC GCGTGGTGGACGACGCCGAGGTGCTTGTCATGACGCCGCAGATCCTCCTCGACAACCTCC GACACAGCTTCTTCCGCCTCCAGGACATCGCGTTGCTCATCTTCGACGAGTGCCACCGCG CCAAGGGCAACTCCCCGTATGCGTGCATTCTCAAGGAATTCTACCACCCTGTAATGAATT CTAGACCACGGGGCCCTCTGCCGAGGATATTTGGGATGACTGCTTCGCCCACAGATGCAA AAAATCAGCTGCAAGAGAGCTATTCCAAACGAATCGTCGAACTGGAGAATCTATTGAACT CAAAGGTGTACACAGTTGACAATGAATCGGCTTTATCGGAATATATACCATTTGCCACTA CGAGGATTGTGGAGTACGATGATTCTATCATCCCATCCAACTCACATAACCATATTAACA GTTGTTTGGACAGGTTGCAAGAGAAGCGTTTCATGCAGGACAACAACACCCTCTAAGATG TGTTTCCCAGGGGTATATATAGGAGTACATGAGGGGTAGAGGCTTGGAGTAGAAGACAAG TCACATGTGGCGTGATTTGGTCGGGTATATATAGGAGTACATGAGGGGTAGAGGCTTGGA GTAGAAGACAAGTCACATGTGGCCTTCTCCAACATTTAAAAGTCCTCAAGGCAAATCTAC ATGGATCGTCTCGGAAAAATGCGAAGAAAGGGATATCAAAATTACACAAGGCATTCTTAT ATTGCACGGCTAATCTTGGAGTATGGCTAGCGGCAAAGGCTGCTGAGATACACTCAACAA CTAACGAACAATTCTTATCTTTCTGGGGTGAAGAACTGGATAAGAATGTTGAAGGCTTTG TTAGAAGCTATAGTGAAGAAGTATACAGGGAACTCTCATGTTTTTCAGAGAGAGGTCATA TTGGTAAAGATTTTGAAGCTGATTTGCAAGATGGGTTATTGACACCTAAAGTTCATTGTC TTGTTCAGTTTCTTCTGGAATACAGGTGGCACATGCAAGACATAAGATGCATTGTATTTG TCGAGAGAGTTGTTACAAGCATTGTGTTGGAGTCTCTCCTGTCCATTATCAATCAAATGC CTGGGTGGATTATTAAACACATTGCAGGAAACAGACCTATGTTGCACAACCAGAGTAGAA ATAAACAAACGGAAATTGTTGACGCCTTTAAAGGAGGAAAGTGGACATTATCCACCTCTT TTCCCACTTCATCAGTTGAATATGATGTGCTCAGTATATAATCCTTGGGGGGATGCAGAG GCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATGATGCGGGAAGCATCTCTG AAGCTTATACTTTACACCTCTTCCGAGATTCATTATTGACAAGGAACTACGTACTTGCAC CTTGTACCTTCCCAATAGCAGCCCTGTGCAGACTGTTAATGCAGAAGGAGAAGTTTCTGC CCTCAAAAAGGCAGTTTGTCTTAAGGCCTGCCGAGAATTACACGCTGTCGGCGCCCTAAC AGATTATCTGTTACCAGAATTTGGTTTTCCATGTGAAGAAGAACCCGACATTGTTGTTGA GAAATACCAACACGAGCAGCCTGTGTACTTCCCAGAGGAATTTGTGTACAATTGGTCATC CTTTTCTCGTCTTGGAATATATTATTGCTATAAGATTTCAGTAGAAGGGTGCTTGAAAAC AACTTATTGTCCAAATGACATACTTCTAGCTGTGAAATGTGATTTGGGACCAGAGTTTGT CTCTACCTCACTTCAATTGTTTGGTGCGCAAGATAATGCTAGTCTTGCCATGAAATATGT GGGAATCATTCATCTGAATCAAGAACAGGTAGTTATGGCCAGAAGGTTTCAGACTACTAT TCTTTCTTTGCTTATTAATAAAGACCATTCTGAGGTCAGTAATGCTGTTAAATACTCCCA TGAGATGCAAGTGTCCATTGGAATTGTCTACCTGCTGCTACCCTTAGTTTCTGGCAAAGT TGATTGGTGCAGTATCAAGTTCTCGACCTCGCAAGTGTATGTTGGCAGTAACAAGGATAT CAGACATTGCCATTCTTGTAAACAAGTTGATTTACTGCAAACAAAAGATGGTCCTCTGTG CAGATGCATGCTTGAAAGTTCCATTGTTTGCACCCCTCATAATAGCAAATTCTATGCTGT TAATGGGTTCCTTGACTTAAATTCCAAATCTCTTCTGCACCTTCGTGATGGCAGTGCCCT TACCTACATAAACTATTTCAAGACTAGGCATGGACTCAGTCTAACACATGAAAATCAACC CCTGTTGGCAGCCAGGAGTCCTGTTGAAGTGCGGAATTTCCTCCACAAGCGCCATTATAA AAATAAAAAAGAATCGTGCACTTCACATGGTGTTGAGTTGCCACCTGAGCTCTGCAGACT AGTCATGTCACCAGTCTCTACTAATACTTTGTACAGCTTCTCGATTATTCCTTCTGTAAT GTACCGCATCCAGTGTCTGCTTCTTTCTGCAAAGTTGAAAGATCAACTGGGCCCAATAAT GCAGCAGTTTGCCATACCAGCTCTGAAGATTCTAGAAGCAGTAACAACCAAGGAATGCCA AGAGGAATTTTCACAGGAATCATTAGAAACCCTTGGGGATTCTTTCCTCAAGTACATCGC CACGCAACATCTGTATGTCAAACACAAGCTTCAGCATGAGGGGACATTAACCAAGATGAA GAAAAACTTAATCTCGAATGCAGCTCTATGCCAGCTGGCCTGCAACAACAATCTTGTGGG TTACATTCAAGGGGAAGAGTTTAACCCAAAAGGTTGGATCATTCCAGGGCTTGGTTATGA CATGTGTGGTAACAGCAAATTTTCCTTTTTAAGCTCCAATGATATGCACACTTTGAGGAA AATGTCTGTTAGAAGTAAGAGAATAGCAGATACAGTTGAGGCATTGATTGGAGCCTACCT TGGTGCTGCGGGAGAACAGGCTGCATTTGTTTTCCTAAAATCATTAGGATTGGATATAGG ATTTCACAGCACTATTCCACTTGAAAGGAAGATTGTATTAAAATCTGAAAAGTTCATCAA CGTGAGAAGTTTGGAAATGATTCTTGGTTATGAGTTCAAGGATACTTCATTGTTGGTGGA AGCATTGACACATGGGTCATACCAGACTGCTGGCACTACTGCATGCTATCAGAGGCTTGA GTTTCTCGGAGACGCTGTGTTGGACCATCTCTTCACTATATATTTCTACAATAAGTACCC TGAATGTACTCCAGAATTGTTGACAGATCTTAGATCTGCTTCCGTTAACAACAATTGCTA TGCGCATGCAGCTGCTAAAGCAGGACTAAACAAGCACATTCTTCATTCGTCATTGCCATT GCACGGAAGGATGGCTTACTACTTTGAGAATTTTACTAAGCACCGATTTACAGGTCCATC ACATGGTTGGGAAGCTGGCATTGGTCTACCCAAGGTTCTTGGGGATGTTATTGAATCATT AGCCGGTGCCATTTATCTTGACAGCAAGTATGACAAAGAGGTGGTTTGGAGAAGCATGAA AAAGCTATTGGAGCCTCTTGCGACACCGGAGACGGTTGAGCGTGACCCAGTGAAACTGCT GCAGGAATTTTGTGATCGCAGGTCTTATAGCAGGTCTTACACAAAGGTCCAGAAAGATGG AGTGTCTTCGGTGGTTGGGGAGGTACAGGTAGAAGGGACTACCTACTCAGCAACTGGAAC TGGCCCTGATAAGGTTGTCGCAAAAAAGCTTGCAGCGAAGTTGCTGCTAGAAGATCTGAA GCTCAATCATTGCTTGTGAATATTC