- Transcript HORVU5Hr1G000170.8
- Transcript IDHORVU5Hr1G000170.8
- Gene IDHORVU5Hr1G000170
Barley RTD
Exon Structure of HORVU5Hr1G000170.8
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 553076 | 550700 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g31470.2 | +1 | 4e-112 | 288 | 157/167 (94%) | protein|peptidase, trypsin-like serine and cysteine proteases, putative, expressed |
| TAIR PP10 | AT2G35155 @ ARAPORT AT2G35155.1 @ TAIR |
+1 | 8e-76 | 256 | 120/146 (82%) | Symbols: | Trypsin family protein | chr2:14819209-14821330 REVERSE LENGTH=579 |
| BRACH PP3 | Bradi4g00270.1.p | +1 | 1e-125 | 298 | 164/167 (98%) | pacid=32787831 transcript=Bradi4g00270.1 locus=Bradi4g00270 ID=Bradi4g00270.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2377 bp)
>HORVU5Hr1G000170.8 2377 150831_barley_pseudomolecules ACCAAAGATTCCGACCTCATCATCTGATCTGCTTTGCTATTATCATCTGATCTGCTGTAA TATAATCAAACTACACACGGACCAAAGATTCCGACCTCATCATCTAATCTGCTTTGCTAT TATCATACACAAGGACCAGAGATTCTGTTGTTTTTTACTGCCTCCGCCGTCTGGGTTTAT TTGTCCCCATCGTATTTTGGGTCAAAGTTTGACCACATATTTGACTAGCAAAATGTTAAT CAATGTAAAAAAAAAAAACTATATTGTTGGATTCGTATTTGAATGTACTTTCCAATGATA TTAATTTTTTGCTATGTATAATTTATATTTTATTAGTTAGGATCATTGTCAAAAATATGA CCAAGATATGAGGGGACTAGTAAACCAGGACATAGGTAGTGTTTCACCCGTTTTAATGTA CACCAAAATCATTATTTAGCTGTCAGCTCTTGACACACACATCAGTTTCATGAATTGATA TTTTTAACTCACACTTGTATTGTTTTGAATCCTCAGGTAGCTAGCCTTGAAACATATGGG ACTTTGGGTGCCATCGTGAAGAGTCGAACTGGCAACAAGCAAGTAGGCTTCCTAACGAAC AGACATGTTGCAGTTGACCTGGATTATCCTAATCAAAAGATGTTCCATCCGTTGCCCCCT AATCTTGGACCTGGAGTTTACCTAGGTGCCGTTGAGAGAGCCACGTCTTTTATCACGGAT GATGTTTGGTATGGTATATATGCGGGAACAAACCCAGGTAAACAAATTTGCGATGAAAAA TTGCTTAATATATTTGTTCAACTGTTCAATGGCGTACTCTAGTCAAATGAAAAAGGGTTT ATTTGCGGGTCATTCATCTATAGGCATAAATACCCTATCTTGCAGCCATTTGTTTTCATG CCTTTTGCTGCCATTTGTTTTCATGCCTTTTACTGCCATTTTTTTTATAATGCTCTTGTT CTCTAAAATAATGTTTGCACTTGCAATGCTTGTGCAGAAACATTTGTCCGGGCTGATGGT GCATTTATACCATTTGCGGACGACTTTGACATTACTAATGTCAGCACTTCAGTTAAAGGA GTCGGACTCATTGGTGATATCAAGGCAATCGATCTGCAGTCCCCGATTGGCAGTCTCATC GGGAAGCAAGTTGTGAAAGTTGGAAGAAGCTCAGGCCATACGACAGGGACCGTCATGGCA TATGCTCTTGAATACAACGATGAGAAGGGCATATGCTTTTTTACCGACTTCCTCGTCGTC GGGGAGAACCAGCAAACGTTTGATCTTGAAGGGGACAGCGGAAGCCTTATAATCTTGACA GGACAAGATGGTGAGAAGCCACAGCCTATAGGGATTATATGGGGTGGCACGGCCAACCGT GGAAGGTTGAAGCTCAAAAGTGGGCAGGGCCCGGAGAACTGGACGAGTGGTGTTGATCTG GGGCGCCTCCTTGACCTCCTCGAGCTCGATCTGATCACGACAAGCGAAGGGCTGCAAGGT CTGTGCTTTCCTAACACTGACTGAATGAGCGTTGCTTGTTGGAAACACAACTAGGCATGT TGTTTGTAGCATCACCTTGATTTCCTCCTCTGTTTTGTTGGTTGGTTGGCACAACAGAGG CCCTGGAGGAGCAGAGGATCACCCTAGCAGCCGCCGTGGCAGCGGCCAATTCTACGGCCA CCGAGTCGTCGCCCGTGGCCGCCACACCGCAAGAAGCCGAGAAAGTGGACAAGATCTACG AGCCCCTGGGGATCAACATCCAGCAGCTCCCCCGGGACGGCCCCGCCAACTCGACGGAGC AGCCCTTCGGGCCCGGCGAGTTCCACGTCGACACGGTGGAAGGGATAAATAGCAGCAACG TGGAGGAGCGGCAGTTCATCCCGAACCTGATGGGCATGTCCTCGATGCGCGACGAGCAAG GAGGCAACGGCGAGCTGGAAAACAACAACAGCTGCAACCTGGAGAGCCCGGCGGAGGACA ACATCTGCTTCTCGCTGCACCTGGGCGAGCGGGAGCCTAAGAGGCTCCGGTCCGACACGA CGACGGTGGACATAGACCTGCAGAAATGACGGTTCCTTTCGTCGCCCCCCTCTGTATGCT GCGGGGTCGCCGTTGTTGTTGTTATCATTGGAGGCGATTGCGATTTGTGCATTGTATGCA TTGGGATGGCAGAATAAAACCCCATTGATCGATCTGTGAGATGAGGACCTCTTGTTGTAT TGCTCGCTGGGACCCACAGAGTTTTACTACGTGTACTAGTTTCAGGTGAAAATGATTGTG CTGTCAGCTGTATGTGATTTGATTTAACTCCCAACTCCTCAGCCAACTAACCAGCATGTG AATGTGAATAATGGAAGGAAAATGCTACGGCCTACGG