Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u32165	44.0	+	+	4669	-5946	Containing

Transcripts from Gene HORVU5Hr1G000170

Transcript	Length(bp)	Description
HORVU5Hr1G000170.1	2871	gene=HORVU5Hr1G000170 CDS=678-2495
HORVU5Hr1G000170.2	2874	gene=HORVU5Hr1G000170 CDS=681-2498
HORVU5Hr1G000170.3	2626	gene=HORVU5Hr1G000170 CDS=470-2287
HORVU5Hr1G000170.4	2629	gene=HORVU5Hr1G000170 CDS=473-2290
HORVU5Hr1G000170.5	1814	gene=HORVU5Hr1G000170 CDS=2-1447
HORVU5Hr1G000170.6	2522	gene=HORVU5Hr1G000170 CDS=313-2130
HORVU5Hr1G000170.7	1580	gene=HORVU5Hr1G000170 CDS=8-1579
HORVU5Hr1G000170.8	2377	gene=HORVU5Hr1G000170 CDS=1195-1524

Exon Structure of HORVU5Hr1G000170

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os08g31470.2	+3	0.0	967	526/607 (87%)	protein|peptidase, trypsin-like serine and cysteine proteases, putative, expressed
TAIR PP10	AT2G35155 @ ARAPORT AT2G35155.1 @ TAIR	+3	0.0	689	377/588 (64%)	Symbols: | Trypsin family protein | chr2:14819209-14821330 REVERSE LENGTH=579
BRACH PP3	Bradi4g00270.1.p	+3	0.0	1018	548/608 (90%)	pacid=32787831 transcript=Bradi4g00270.1 locus=Bradi4g00270 ID=Bradi4g00270.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons