- Transcript HORVU5Hr1G000170.7
- Transcript IDHORVU5Hr1G000170.7
- Gene IDHORVU5Hr1G000170
Barley RTD
Exon Structure of HORVU5Hr1G000170.7
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 549972 | 549486 | + |
| chr5H | 2 | 550199 | 550056 | + |
| chr5H | 3 | 551108 | 551040 | + |
| chr5H | 4 | 551456 | 551216 | + |
| chr5H | 5 | 552197 | 551697 | + |
| chr5H | 6 | 552454 | 552317 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g31470.2 | +2 | 0.0 | 858 | 461/525 (88%) | protein|peptidase, trypsin-like serine and cysteine proteases, putative, expressed |
| TAIR PP10 | AT2G35155 @ ARAPORT AT2G35155.1 @ TAIR |
+2 | 0.0 | 674 | 334/450 (74%) | Symbols: | Trypsin family protein | chr2:14819209-14821330 REVERSE LENGTH=579 |
| BRACH PP3 | Bradi4g00270.1.p | +2 | 0.0 | 879 | 475/526 (90%) | pacid=32787831 transcript=Bradi4g00270.1 locus=Bradi4g00270 ID=Bradi4g00270.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1580 bp)
>HORVU5Hr1G000170.7 1580 150831_barley_pseudomolecules ATAAATAATGCAGCAGCCTTCACGCATTTGGAAGGCGCATGCCGAGGACGGGTCGGGGCT GGACATGGAGAGGAACGGATGCAACGGCCACAATAACGTTAACCGCTGCCCGTCCCCTCT CCAGCCCGTCGCCTCAGCTGGCCAGCACTCCGAAAGCGCCGCCGCCTACTTCTCTTGGCC CACGTCTACGCTGATGCACGGCTCCGCCGAAGGCCGCGCCAACTACTTTGGGAACCTGCA GAAGGGCGTGCTCCCGGGCCACCTTGCCCGCCTGCCCAAAGGCCAGCAGGCCACCACCTT GCTCGATCTCATGATTATAAGGGCGTTCCACAGCAAGATCCTGCGCCGCTTCAGCCTTGG CACCGCCATAGGCTTCCGGATCAGGAAGGGGACGTTGACCGACACGCCCGCCATCCTCGT CTTTGTTGCTCGCAAGGTTAACAAGAAGTGGCTCAGGCCTACGCAGTGCCTTCCGGCCGC CCTCGAGGGGCCTGGGGGTGTGTGGTGTGATGTCGATGTTGTTGAATTCTCGTATTATGG TGCACCCGCACCCACTCCAAAGGAACAACTGTACGACGAGCTTGTTGATGGGCTGCGTGG CAGCGATCCATCTATAGGCTCTGGTTCACAGGATCATTGTCAAAAATATGACCAAGATAT GAGGGGACTAGTAAACCAGGACATAGGTAGTGTTTCACCCGTAGCTAGCCTTGAAACATA TGGGACTTTGGGTGCCATCGTGAAGAGTCGAACTGGCAACAAGCAAGTAGGCTTCCTAAC GAACAGACATGTTGCAGTTGACCTGGATTATCCTAATCAAAAGATGTTCCATCCGTTGCC CCCTAATCTTGGACCTGGAGTTTACCTAGGTGCCGTTGAGAGAGCCACGTCTTTTATCAC GGATGATGTTTGGTATGGTATATATGCGGGAACAAACCCAGAAACATTTGTCCGGGCTGA TGGTGCATTTATACCATTTGCGGACGACTTTGACATTACTAATGTCAGCACTTCAGTTAA AGGAGTCGGACTCATTGGTGATATCAAGGCAATCGATCTGCAGTCCCCGATTGGCAGTCT CATCGGGAAGCAAGTTGTGAAAGTTGGAAGAAGCTCAGGCCATACGACAGGGACCGTCAT GGCATATGCTCTTGAATACAACGATGAGAAGGGCATATGCTTTTTTACCGACTTCCTCGT CGTCGGGGAGAACCAGCAAACGTTTGATCTTGAAGGGGACAGCGGAAGCCTTATAATCTT GACAGGACAAGATGGTGAGAAGCCACAGCCTATAGGGATTATATGGGGTGGCACGGCCAA CCGTGGAAGGTTGAAGCTCAAAAGTGGGCAGGGCCCGGAGAACTGGACGAGTGGTGTTGA TCTGGGGCGCCTCCTTGACCTCCTCGAGCTCGATCTGATCACGACAAGCGAAGGGCTGCA AGAGGCCCTGGAGGAGCAGAGGATCACCCTAGCAGCCGCCGTGGCAGCGGCCAATTCTAC GGCCACCGAGTCGTCGCCCGTGGCCGCCACACCGCAAGAAGCCGAGAAAGTGGACAAGAT CTACGAGCCCCTGGGGATCA