- Transcript HORVU5Hr1G000170.5
- Transcript IDHORVU5Hr1G000170.5
- Gene IDHORVU5Hr1G000170
Barley RTD
Exon Structure of HORVU5Hr1G000170.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 549098 | 548846 | + |
| chr5H | 2 | 551456 | 551216 | + |
| chr5H | 3 | 552197 | 551697 | + |
| chr5H | 4 | 553135 | 552317 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g31470.2 | +2 | 0.0 | 593 | 342/402 (85%) | protein|peptidase, trypsin-like serine and cysteine proteases, putative, expressed |
| TAIR PP10 | AT5G45030 @ ARAPORT AT5G45030.2 @ TAIR |
+2 | 8e-144 | 430 | 251/399 (63%) | Symbols: | Trypsin family protein | chr5:18172981-18175238 FORWARD LENGTH=607 |
| BRACH PP3 | Bradi4g00270.1.p | +2 | 0.0 | 635 | 359/402 (89%) | pacid=32787831 transcript=Bradi4g00270.1 locus=Bradi4g00270 ID=Bradi4g00270.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1814 bp)
>HORVU5Hr1G000170.5 1814 150831_barley_pseudomolecules GAAATTACAGCGGAAGTGCCACACACATCCATCCATCCCCGGTCAGATCCACCTCCGCCG CCGGCCTCCCAGCTCGCGCGACCTCAAGATCCGGCGCCGTCGCCCCTGCCCCTGCAAGCA GCGCAGCCCCTCTGACCACCTCGGTAATGGCGCCGTCGCCCCTGCCCCTGCCCCTGCCCC TGCAAGCAGCGCAGCCCCTCTGACCACCTCTCCCCGCACCGTCTCCGTCGCCGCTGCCTC CTCCACGCCCGAGGTAGCTAGCCTTGAAACATATGGGACTTTGGGTGCCATCGTGAAGAG TCGAACTGGCAACAAGCAAGTAGGCTTCCTAACGAACAGACATGTTGCAGTTGACCTGGA TTATCCTAATCAAAAGATGTTCCATCCGTTGCCCCCTAATCTTGGACCTGGAGTTTACCT AGGTGCCGTTGAGAGAGCCACGTCTTTTATCACGGATGATGTTTGGTATGGTATATATGC GGGAACAAACCCAGAAACATTTGTCCGGGCTGATGGTGCATTTATACCATTTGCGGACGA CTTTGACATTACTAATGTCAGCACTTCAGTTAAAGGAGTCGGACTCATTGGTGATATCAA GGCAATCGATCTGCAGTCCCCGATTGGCAGTCTCATCGGGAAGCAAGTTGTGAAAGTTGG AAGAAGCTCAGGCCATACGACAGGGACCGTCATGGCATATGCTCTTGAATACAACGATGA GAAGGGCATATGCTTTTTTACCGACTTCCTCGTCGTCGGGGAGAACCAGCAAACGTTTGA TCTTGAAGGGGACAGCGGAAGCCTTATAATCTTGACAGGACAAGATGGTGAGAAGCCACA GCCTATAGGGATTATATGGGGTGGCACGGCCAACCGTGGAAGGTTGAAGCTCAAAAGTGG GCAGGGCCCGGAGAACTGGACGAGTGGTGTTGATCTGGGGCGCCTCCTTGACCTCCTCGA GCTCGATCTGATCACGACAAGCGAAGGGCTGCAAGAGGCCCTGGAGGAGCAGAGGATCAC CCTAGCAGCCGCCGTGGCAGCGGCCAATTCTACGGCCACCGAGTCGTCGCCCGTGGCCGC CACACCGCAAGAAGCCGAGAAAGTGGACAAGATCTACGAGCCCCTGGGGATCAACATCCA GCAGCTCCCCCGGGACGGCCCCGCCAACTCGACGGAGCAGCCCTTCGGGCCCGGCGAGTT CCACGTCGACACGGTGGAAGGGATAAATAGCAGCAACGTGGAGGAGCGGCAGTTCATCCC GAACCTGATGGGCATGTCCTCGATGCGCGACGAGCAAGGAGGCAACGGCGAGCTGGAAAA CAACAACAGCTGCAACCTGGAGAGCCCGGCGGAGGACAACATCTGCTTCTCGCTGCACCT GGGCGAGCGGGAGCCTAAGAGGCTCCGGTCCGACACGACGACGGTGGACATAGACCTGCA GAAATGACGGTTCCTTTCGTCGCCCCCCTCTGTATGCTGCGGGGTCGCCGTTGTTGTTGT TATCATTGGAGGCGATTGCGATTTGTGCATTGTATGCATTGGGATGGCAGAATAAAACCC CATTGATCGATCTGTGAGATGAGGACCTCTTGTTGTATTGCTCGCTGGGACCCACAGAGT TTTACTACGTGTACTAGTTTCAGGTGAAAATGATTGTGCTGTCAGCTGTATGTGATTTGA TTTAACTCCCAACTCCTCAGCCAACTAACCAGCATGTGAATGTGAATAATGGAAGGAAAA TGCTACGGCCTACGGCCTGTGTGATGTGTATCTACCAACTGTCGAGTACTCCTAAAGGAG GAGTTGATAGCTTT