- Transcript HORVU5Hr1G000170.3
- Transcript IDHORVU5Hr1G000170.3
- Gene IDHORVU5Hr1G000170
Barley RTD
Exon Structure of HORVU5Hr1G000170.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 548764 | 548619 | + |
| chr5H | 2 | 549098 | 548846 | + |
| chr5H | 3 | 549972 | 549423 | + |
| chr5H | 4 | 550199 | 550056 | + |
| chr5H | 5 | 551456 | 551216 | + |
| chr5H | 6 | 552197 | 551697 | + |
| chr5H | 7 | 553107 | 552317 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g31470.2 | +2 | 0.0 | 967 | 526/607 (87%) | protein|peptidase, trypsin-like serine and cysteine proteases, putative, expressed |
| TAIR PP10 | AT2G35155 @ ARAPORT AT2G35155.1 @ TAIR |
+2 | 0.0 | 689 | 377/588 (64%) | Symbols: | Trypsin family protein | chr2:14819209-14821330 REVERSE LENGTH=579 |
| BRACH PP3 | Bradi4g00270.1.p | +2 | 0.0 | 1018 | 548/608 (90%) | pacid=32787831 transcript=Bradi4g00270.1 locus=Bradi4g00270 ID=Bradi4g00270.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2626 bp)
>HORVU5Hr1G000170.3 2626 150831_barley_pseudomolecules GACAATGAATGAATGATGAAGTTTCTTCATTCAGCCATATGGCTCTTAATAATGTGTACT GTAATTTAATATTAGTAAGGATGGATCCTAATTTATTTTGTAGCTAGGAGCGAAACTGTT AAGATGGTGTAGGCCAGTGAAAAGTGGAAATTACAGCGGAAGTGCCACACACATCCATCC ATCCCCGGTCAGATCCACCTCCGCCGCCGGCCTCCCAGCTCGCGCGACCTCAAGATCCGG CGCCGTCGCCCCTGCCCCTGCAAGCAGCGCAGCCCCTCTGACCACCTCGGTAATGGCGCC GTCGCCCCTGCCCCTGCCCCTGCCCCTGCAAGCAGCGCAGCCCCTCTGACCACCTCTCCC CGCACCGTCTCCGTCGCCGCTGCCTCCTCCACGCCCGAGCAGGTTCAGGTTCATGTTCAT GTTGAGGACCTACAAAGCTCAAAGGACCCAGATGGTACTGGCATAAATAATGCAGCAGCC TTCACGCATTTGGAAGGCGCATGCCGAGGACGGGTCGGGGCTGGACATGGAGAGGAACGG ATGCAACGGCCACAATAACGTTAACCGCTGCCCGTCCCCTCTCCAGCCCGTCGCCTCAGC TGGCCAGCACTCCGAAAGCGCCGCCGCCTACTTCTCTTGGCCCACGTCTACGCTGATGCA CGGCTCCGCCGAAGGCCGCGCCAACTACTTTGGGAACCTGCAGAAGGGCGTGCTCCCGGG CCACCTTGCCCGCCTGCCCAAAGGCCAGCAGGCCACCACCTTGCTCGATCTCATGATTAT AAGGGCGTTCCACAGCAAGATCCTGCGCCGCTTCAGCCTTGGCACCGCCATAGGCTTCCG GATCAGGAAGGGGACGTTGACCGACACGCCCGCCATCCTCGTCTTTGTTGCTCGCAAGGT TAACAAGAAGTGGCTCAGGCCTACGCAGTGCCTTCCGGCCGCCCTCGAGGGGCCTGGGGG TGTGTGGTGTGATGTCGATGTTGTTGAATTCTCGTATTATGGTGCACCCGCACCCACTCC AAAGGAACAACTGTACGACGAGCTTGTTGATGGGCTGCGTGGCAGCGATCCATCTATAGG CTCTGGTTCACAGGTAGCTAGCCTTGAAACATATGGGACTTTGGGTGCCATCGTGAAGAG TCGAACTGGCAACAAGCAAGTAGGCTTCCTAACGAACAGACATGTTGCAGTTGACCTGGA TTATCCTAATCAAAAGATGTTCCATCCGTTGCCCCCTAATCTTGGACCTGGAGTTTACCT AGGTGCCGTTGAGAGAGCCACGTCTTTTATCACGGATGATGTTTGGTATGGTATATATGC GGGAACAAACCCAGAAACATTTGTCCGGGCTGATGGTGCATTTATACCATTTGCGGACGA CTTTGACATTACTAATGTCAGCACTTCAGTTAAAGGAGTCGGACTCATTGGTGATATCAA GGCAATCGATCTGCAGTCCCCGATTGGCAGTCTCATCGGGAAGCAAGTTGTGAAAGTTGG AAGAAGCTCAGGCCATACGACAGGGACCGTCATGGCATATGCTCTTGAATACAACGATGA GAAGGGCATATGCTTTTTTACCGACTTCCTCGTCGTCGGGGAGAACCAGCAAACGTTTGA TCTTGAAGGGGACAGCGGAAGCCTTATAATCTTGACAGGACAAGATGGTGAGAAGCCACA GCCTATAGGGATTATATGGGGTGGCACGGCCAACCGTGGAAGGTTGAAGCTCAAAAGTGG GCAGGGCCCGGAGAACTGGACGAGTGGTGTTGATCTGGGGCGCCTCCTTGACCTCCTCGA GCTCGATCTGATCACGACAAGCGAAGGGCTGCAAGAGGCCCTGGAGGAGCAGAGGATCAC CCTAGCAGCCGCCGTGGCAGCGGCCAATTCTACGGCCACCGAGTCGTCGCCCGTGGCCGC CACACCGCAAGAAGCCGAGAAAGTGGACAAGATCTACGAGCCCCTGGGGATCAACATCCA GCAGCTCCCCCGGGACGGCCCCGCCAACTCGACGGAGCAGCCCTTCGGGCCCGGCGAGTT CCACGTCGACACGGTGGAAGGGATAAATAGCAGCAACGTGGAGGAGCGGCAGTTCATCCC GAACCTGATGGGCATGTCCTCGATGCGCGACGAGCAAGGAGGCAACGGCGAGCTGGAAAA CAACAACAGCTGCAACCTGGAGAGCCCGGCGGAGGACAACATCTGCTTCTCGCTGCACCT GGGCGAGCGGGAGCCTAAGAGGCTCCGGTCCGACACGACGACGGTGGACATAGACCTGCA GAAATGACGGTTCCTTTCGTCGCCCCCCTCTGTATGCTGCGGGGTCGCCGTTGTTGTTGT TATCATTGGAGGCGATTGCGATTTGTGCATTGTATGCATTGGGATGGCAGAATAAAACCC CATTGATCGATCTGTGAGATGAGGACCTCTTGTTGTATTGCTCGCTGGGACCCACAGAGT TTTACTACGTGTACTAGTTTCAGGTGAAAATGATTGTGCTGTCAGCTGTATGTGATTTGA TTTAACTCCCAACTCCTCAGCCAACTAACCAGCATGTGAATGTGAATAATGGAAGGAAAA TGCTACGGCCTACGGCCTGTGTGATGTGTATCTACCAACTGTCGAG