- Transcript HORVU5Hr1G000150.8
- Transcript IDHORVU5Hr1G000150.8
- Gene IDHORVU5Hr1G000150
Barley RTD
Exon Structure of HORVU5Hr1G000150.8
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 544004 | 543904 | + |
| chr5H | 2 | 544288 | 544118 | + |
| chr5H | 3 | 544850 | 544680 | + |
| chr5H | 4 | 545100 | 544945 | + |
| chr5H | 5 | 545338 | 545192 | + |
| chr5H | 6 | 545575 | 545503 | + |
| chr5H | 7 | 546156 | 545683 | + |
| chr5H | 8 | 546463 | 546260 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g44340.1 | +3 | 0.0 | 374 | 257/261 (98%) | protein|ATMAP70 protein, putative, expressed |
| TAIR PP10 | AT1G68060 @ ARAPORT AT1G68060.1 @ TAIR |
+3 | 3e-153 | 355 | 239/261 (92%) | Symbols: ATMAP70-1, MAP70-1 | microtubule-associated proteins 70-1 | chr1:25511392-25514226 REVERSE LENGTH=622 |
| BRACH PP3 | Bradi4g00250.1.p | +3 | 0.0 | 373 | 256/261 (98%) | pacid=32788741 transcript=Bradi4g00250.1 locus=Bradi4g00250 ID=Bradi4g00250.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1497 bp)
>HORVU5Hr1G000150.8 1497 150831_barley_pseudomolecules GACAATCCTGACTTTGCCTTACGCATCAATGTAAGCTTACCGAAGAACTGGCAAAGGTGG ATGGGAAGCTCAAGCTCACCGAGTCTCTCCTGGAAAGCAAAAACCTTGAAGCGAAGAAGA TCAACGACGAGAAGAAAGCAGCGCTTGCCGCCCAGTTTGCAGCGGAGGCTACGCTGCGAA GGGTTCATGCCGCGCAGAAGGACGATGACATGCCTCCCATCGAGGCCATCCTCGCGCCGC TGGAGGCCGAGCTGAAACTAGCCCGTCAAGAGATTGCAAAATTACAAGATGACAACAGGG CATTAGACCGTCTTACAAAGTCTAAGGAAGCAGCTCTGCTGGAAGCAGAAAGGACCGTTC AGATAGCACTAGCAAAAGCTTCCTTGGTGGATGATCTGCAAAATAAAAACCAAGAATTGA TGAAACAGATCGAGATATGTCAGGAAGAGAACAAAATCTTGGACAGAATGCACCGCCAGA AGGTTGCTGAGGTTGAAAAGCTTACTCAGACCGTCAGAGAGCTAGAAGAAGCTGTTCTTG CTGGCGGTGCAGCCGCAAATGCTGTGAGGGACTATCAGCGGAAAGTTCAGGAGATGAATG AGGAAATGAAAACTCTGGATCGTGAGCTTGCTCGTGCAAAGGTTTCAGCAAATAGGGTCG CGGTAGTGGTGGCAAATGAGTGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAGCAAT GGCTTGAAGAACGGAGGCTTCTGCAAGGAGAAATGCAGCAACTCCGTGATAAACTTGCTA TAGCAGAAAGGGCTGCAAGATCAGAAGCTCAACTGAAGGGACAAGTTCCAGCTACGGCTT AAAGTGCTTGAGGAAGGATTGAGAATGTCGACATCTCGAACCAATGCAAGTGCCGCCCGC CGCCAGTCTATTGGTGGCGCTGAGAGTGCATCCAAGACCAATGGCTTTCTATCGAAGCGG CCATCATTCCAGATGAGAACATCGGTATCTACCACCACGACTACGCTTGTGAACCATGCG AAGGGGGCATCCAAGTCTTTTGATGGAGGGTGTAGATCACTTGACCGTTATAAGGGCCAT GTAAATGGGGTTGGCATGAACGTATCAACCGACTCCAGCGAGGATAAGGAGTCAAACAAC TCAGATGAGAAGCCTAGTGAATTTACATCTGTTGAGTCGGAGGACACGGTGTCAGGTATG CTGTATGATATGCTGCAAAAGGAGGTTGTTGCTCTAAGGAAGGCTTGTCATGAAAAGGAC CAAAGCTTGAAAGACAAGGACGACGCAGTCGAGATGTTGGCCAAGAAAGTCGACACTTTA ACAAAGGCGATGGAGTCAGAGGCTAAGAAGATGAGACGGGATGTAGCTGCCATGGAGAAG GAGGTGGTGGCTATGCGATTAGAGAAAGAGCAGGATACGAAAGCAAGAAGGTTCGGCAGT TCAAGCGCCTCTGCCTCACAGGTGCCACCTGGAAGGTACAGTACACCCCTACCGCAG