Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u32165	41.6	+	+	4416	-6199	Containing

Transcripts from Gene HORVU5Hr1G000150

Transcript	Length(bp)	Description
HORVU5Hr1G000150.1	2375	gene=HORVU5Hr1G000150 CDS=187-1980
HORVU5Hr1G000150.2	1900	gene=HORVU5Hr1G000150 CDS=185-1900
HORVU5Hr1G000150.3	2614	gene=HORVU5Hr1G000150 CDS=182-1927
HORVU5Hr1G000150.4	2459	gene=HORVU5Hr1G000150 CDS=181-1959
HORVU5Hr1G000150.5	1828	gene=HORVU5Hr1G000150 CDS=133-1827
HORVU5Hr1G000150.6	1735	gene=HORVU5Hr1G000150 CDS=254-1735
HORVU5Hr1G000150.7	1725	gene=HORVU5Hr1G000150 CDS=237-1724
HORVU5Hr1G000150.8	1497	gene=HORVU5Hr1G000150 CDS=210-842

Exon Structure of HORVU5Hr1G000150

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os12g44340.1	+2	0.0	844	516/565 (91%)	protein|ATMAP70 protein, putative, expressed
TAIR PP10	AT1G24764 @ ARAPORT AT1G24764.1 @ TAIR	+2	0.0	634	413/553 (75%)	Symbols: ATMAP70-2, MAP70-2 | microtubule-associated proteins 70-2 | chr1:8760001-8763256 REVERSE LENGTH=634
BRACH PP3	Bradi4g00250.1.p	+2	0.0	876	537/567 (95%)	pacid=32788741 transcript=Bradi4g00250.1 locus=Bradi4g00250 ID=Bradi4g00250.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons