- Transcript HORVU5Hr1G000150.1
- Transcript IDHORVU5Hr1G000150.1
- Gene IDHORVU5Hr1G000150
Barley RTD
Exon Structure of HORVU5Hr1G000150.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 543119 | 542765 | + |
| chr5H | 2 | 543353 | 543268 | + |
| chr5H | 3 | 544004 | 543939 | + |
| chr5H | 4 | 544288 | 544118 | + |
| chr5H | 5 | 544850 | 544680 | + |
| chr5H | 6 | 545100 | 544945 | + |
| chr5H | 7 | 545338 | 545192 | + |
| chr5H | 8 | 545574 | 545503 | + |
| chr5H | 9 | 546156 | 545683 | + |
| chr5H | 10 | 546442 | 546260 | + |
| chr5H | 11 | 547067 | 546574 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g44340.1 | +1 | 0.0 | 845 | 516/565 (91%) | protein|ATMAP70 protein, putative, expressed |
| TAIR PP10 | AT1G24764 @ ARAPORT AT1G24764.1 @ TAIR |
+1 | 0.0 | 634 | 413/552 (75%) | Symbols: ATMAP70-2, MAP70-2 | microtubule-associated proteins 70-2 | chr1:8760001-8763256 REVERSE LENGTH=634 |
| BRACH PP3 | Bradi4g00250.1.p | +1 | 0.0 | 875 | 537/567 (95%) | pacid=32788741 transcript=Bradi4g00250.1 locus=Bradi4g00250 ID=Bradi4g00250.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2375 bp)
>HORVU5Hr1G000150.1 2375 150831_barley_pseudomolecules GATGGGCCTGCAAATGAATGAAATGACCATCCTCTCCTCTCCTCTCCTCTCCCACACACA CACACTGTCATTCATGTGACCTGACCGCCATTAACACACTCTCTCCGACCGCCCCCCACA AGCACAGCGCAGGCGCAGGCGCATTGGCCGGCGTGCTTGCGATCGGGATTGCCGGCGGCG GGGGCCATGGCCGATCCGTACGGCGACGGCCGGGCGCTGAGGAACCATCAGCAGGCGCCG GCACAGCAGCGGCCGAGGCTGAAGCCGGCGCTGGAGATGGAGGACCTCATCAGCCTGCTC CACGGCTCCGATCCCGTCCGCGTCGAGCTCACCCGCCTCGAGAACGACCTCCACTATAAG GAGAAGGAGCTGGGCGACGCGCAGGCGGAGATCAAGGCCCTGCGCCTCTCCGAGCGGGCC CGCGAGAAGGCCGTCGAGGATCTTACCGAAGAACTGGCAAAGGTGGATGGGAAGCTCAAG CTCACCGAGTCTCTCCTGGAAAGCAAAAACCTTGAAGCGAAGAAGATCAACGACGAGAAG AAAGCAGCGCTTGCCGCCCAGTTTGCAGCGGAGGCTACGCTGCGAAGGGTTCATGCCGCG CAGAAGGACGATGACATGCCTCCCATCGAGGCCATCCTCGCGCCGCTGGAGGCCGAGCTG AAACTAGCCCGTCAAGAGATTGCAAAATTACAAGATGACAACAGGGCATTAGACCGTCTT ACAAAGTCTAAGGAAGCAGCTCTGCTGGAAGCAGAAAGGACCGTTCAGATAGCACTAGCA AAAGCTTCCTTGGTGGATGATCTGCAAAATAAAAACCAAGAATTGATGAAACAGATCGAG ATATGTCAGGAAGAGAACAAAATCTTGGACAGAATGCACCGCCAGAAGGTTGCTGAGGTT GAAAAGCTTACTCAGACCGTCAGAGAGCTAGAAGAAGCTGTTCTTGCTGGCGGTGCAGCC GCAAATGCTGTGAGGGACTATCAGCGGAAAGTTCAGGAGATGAATGAGGAAATGAAAACT CTGGATCGTGAGCTTGCTCGTGCAAAGGTTTCAGCAAATAGGGTCGCGGTAGTGGTGGCA AATGAGTGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAGCAATGGCTTGAAGAACGG AGGCTTCTGCAAGGAGAAATGCAGCAACTCCGTGATAAACTTGCTATAGCAGAAAGGGCT GCAAGATCAGAAGCTCAACTGAAGGACAAGTTCCAGCTACGGCTTAAAGTGCTTGAGGAA GGATTGAGAATGTCGACATCTCGAACCAATGCAAGTGCCGCCCGCCGCCAGTCTATTGGT GGCGCTGAGAGTGCATCCAAGACCAATGGCTTTCTATCGAAGCGGCCATCATTCCAGATG AGAACATCGGTATCTACCACCACGACTACGCTTGTGAACCATGCGAAGGGGGCATCCAAG TCTTTTGATGGAGGGTGTAGATCACTTGACCGTTATAAGGGCCATGTAAATGGGGTTGGC ATGAACGTATCAACCGACTCCAGCGAGGATAAGGAGTCAAACAACTCAGATGAGAAGCCT AGTGAATTTACATCTGTTGAGTCGGAGGACACGGTGTCAGGTATGCTGTATGATATGCTG CAAAAGGAGGTTGTTGCTCTAAGGAAGGCTTGTCATGAAAAGGACCAAAGCTTGAAAGAC AAGGACGACGCAGTCGAGATGTTGGCCAAGAAAGTCGACACTTTAACAAAGGCGATGGAG TCAGAGGCTAAGAAGATGAGACGGGATGTAGCTGCCATGGAGAAGGAGGTGGTGGCTATG CGATTAGAGAAAGAGCAGGATACGAAAGCAAGAAGGTTCGGCAGTTCAAGCGCCTCTGCC TCACAGGTGCCACCTGGAAGGGACTCTGCCTCGGAGCNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGCACGCAACATGTGATGCTGCTGATATGA AGCATTAAAAAGACCTTGGAGCACCTCCTGTGTAGTTAGTTGAATGATGGCATCCAGGGA CCCTCTGCTGACTTGTGTGTAGAAAAAACAAGAAGGCATTGCATCTTGGTGCCCAGAAGT GTCGAGCCTGAGCCTGAGCCTGATCGATCGTGCCTGCTACATCTCGTGGTCGCGGAAATC AATCAATCAGCGACTCGGGTCGAGTGAAGTTAGTGTCGTTGATGAGATTTGGCGGTGTTT TTATTCATTTCCTGTCGTGGAACCGAAAACACTTTGTTGTATAGGTATGGTGTGGCCTTG CAATATTTTTTGTTTGTAATCCTACCTACTCCCCAAGAGCTTGTGTGGTGTTTTATGCTA GCCAAGTTGTTTGTGAATAATAACATGATGATGAT