- Transcript HORVU4Hr1G074360.3
- Transcript IDHORVU4Hr1G074360.3
- Gene IDHORVU4Hr1G074360
Barley RTD
Exon Structure of HORVU4Hr1G074360.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109260 | - |
| chr4H | 2 | 594110196 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112801 | 594112592 | - |
| chr4H | 7 | 594112958 | 594112873 | - |
| chr4H | 8 | 594113869 | 594113771 | - |
| chr4H | 9 | 594115363 | 594115181 | - |
| chr4H | 10 | 594116068 | 594115461 | - |
| chr4H | 11 | 594116644 | 594116575 | - |
| chr4H | 12 | 594116918 | 594116730 | - |
| chr4H | 13 | 594117137 | 594117009 | - |
| chr4H | 14 | 594119321 | 594117220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +2 | 0.0 | 818 | 451/690 (65%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+2 | 2e-151 | 506 | 283/633 (45%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
| BRACH PP3 | Bradi1g74000.4.p | +2 | 0.0 | 1049 | 525/659 (80%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5053 bp)
>HORVU4Hr1G074360.3 5053 150831_barley_pseudomolecules GCGCCGTCGACCTCGCGCCCGACTCCCTCGAGCTCGCCCACTTCCGCGCCCTGCTCCTCT ACGACGCCGCCACCGACAACCGCGCCTACGAGGAGGTCATCGCCGAGTGCGAGCGCGGGC TCAGGATCGACGAGCCATCCGACCCGGAGCCCCACTCGCTCCGGCTCCCCGCCCCCGACC CCGACCAGCTCCGCGCCGAGCTCCGCAACCTCGTCCAGAAGGCCAATCTCGCATCCATTT CCACCTGGGTCAAGACCCTCGGCGGCTCCGATGACAAGCTCGGCTTCTTCCGCCTGGCCG ATGACCCCCTGGAGCTCCAGCTCCTGCCCGCGGCCCCAGCCCCGCGCCGCCCTAACGAGA TCAAGAAGGCCACCAAGACCGTCGAGGAGCGCCGCAAGGAGATCGAGGTGCAGGTCGCCG CTCTCAGGCTGCTGGAGCAGCAGCAGCAGCAGCACAATGCCGCCGCGGCTCTCTCCTCCT CACCACCACAGTCACAGCAGGGAGATGAGCCCCCCTCCTCATCATCTCAGTCCACCGCCT CCGGCCATCGCGCTGATCGGAGAAAGGGAGGGTCCAAAAGGGCAACAGTCTCATCGGCAT CCGACCAAAGGAATCAGGTGCGTGCGTTCTTGGCCGCTCTCCCTGTTGACCGAAGGCTGG CCTTACTGAAAACTAGCATTTCTGAGCTCAAGTCGTACTACAAAACTCACAAGGACAAAG ATGTTGCCGATGCGGCACCTGCGGTGCTTGATGAGGTGGTAGAGTTTGCCACTTCACACG GGTGTTGGGAGTTCTGGTTATGTGGCATCTGTGAGGAGCGCTACCCAGATGTGGCGCATT CATTGCGGGAGCATGTGAGTGCAATACCACGTCAAGTGCAGGCTATGTTGCCACAGGAGA TTGATGCTGACTGGGCAGCAATGCTCCTTGGCTCGAGCTGGAGGCCAGTGGATGTTGCTG CGGCGCTCAAAGCGCTTGAGGAAGAGCAAGGGGACAATATCGGCCAAGACAGGGACAAAG ATTCAATGTCATCCGATAATTGGAGTATCAAGGACAAGTCGGACACCTCAGAATCCTCAG CCTCGCCACACAATGAGGAGTGTGATGGTTTTGGAGTGGTAATGAGGGAAGGTGCCCGAA AATGGCCGCTGTCTGATGATGATGAAAGAGCGAAGATTTTGGAGAGGATCCATTCATTGT TCCAAACCCTTGTGAAGCATAAAAACATTTCAGTGAACCATCTGAACAGGGTGATACAAT ATGCCATGGACGAACTTAGAGGGATGCCTTCTGCGTCATTGTTGCTTAACCACTCTATTG AAGAGTCGCCACTCTGCATTTGCTTCTTGGAGGCCTCATCACTGAAGAAGGTTCTCAAGT TCTTGCAAGACCTAATGCAGTCCTGTGGACTTAGTAGGTCCTCAGAGAAGGATGGCGAAC TAGGTGATAGAGATTGTTTCCCCAAAAATAACACTATCCTTGAGGGTGTTACGCTGGATT CTGGTTCATCATCACTGATCCTTGATGGCCGGGTATTTGGCGGGAAGTCGAAGTCTGGTC CTGAGAATGTTGATACTGATGAATTCCTTTCGTGGCTGTATGCTGGATCTCCTCCAATAG GAGAGCAGCTATCAGAGTGGAACTGTATGCTTGTTGATAGGACAAGTCAAGGGATGCAGA TTCTTGATATGATCGACAAGGAGGCATCTGTCTTGAGAAACTTGTGTGAAATGAAGCATG AACAATTGAGCATTGAGGAGGGTGTGCTTGCTGTGAACAATATTATACTTGAGGAGCAAC GGCTAAGGGACCGTGGGGGGCGGTATTCATATCAAGGGTTCGAGGATCTCTTGAGGAACC GTCAGGAGGAGTTGTTGGAGACCAGATTTCGCAGCTCTGAGTACGATGCAATCTCAAACA TCTTGAAGGAAGTTCGCGCCTCACACTTTGGTTATGATGAAGGTTTTTCTGGGATGACCT CGCGCCAATGTGACTATGATGGGGCAGTAATAGATGATTGGAGGTTGCATGACTTTATGC ACCCAAGCGATTCAGTGGTGCCGTCGATTGTTTTGAGGATGAAGGAACATGCAACTACGG AGCTTGGCAAGATAGACGCTAGGATTATGCGAAGTGTAGCTCTGATGCAGCAACTGGATC TCAAGCTTGAACCTGCTGCTTTAGTTGATTATCGATCAATTCTTCTCCCCCTCCTGAAAT CCTTCTTGCGAAACCATTTGGAAGAGCTCGCGGACAAGGATGCTAGAGAGAGATCTGATG CAGCAAGAGACGCCTTTCTAGCTGAACTTGCTTTAGATGCTGAGAAGAGTGCAAACAAAG GGGTTGATAAAAAACTTACCCATGAGAAATCAAAGGACAAGAAGAGAATGAAGGATTCTA GGAGATCCAAGGATATCAAGAGGATTTGAGCTGGAGTGATCAATACATTGTTCGCCAGGA CAGTGCAGATGAGGAAACATCAGAGCAAGCTCAGACTCTTGTTGATTGTGATGACTTTGA CGGCAAACTTTCACTAAGTGATGAGTACTCAAATGAGCAAGAGGAAGAGCTTAGGCATAG AGTACAACTTGAAGCAGAGGAAAGAAAACTGGAGGAAACATTGGAGTACCAAAGGCGGAT AGAGGAGGAGGCAAAGCAGAAGCATCTTGCCGAACAGTCCAGAAGTACTTCGTCAGCTCC TGATATTGGGACAAATGGTTATTCAACTGATGTAAATTCAAGCGTGCATCAGGATAACCA TCAAAGTGCACCCAATAATGTCTCACCTGCTTATCTTGAAGGGATAAAGTTTGGTGATTT TCGCTTTCCTAAAGTTCCCTCGCGGGAAAAGAATTCTAGTTCCGATTTTTGTGGTGTGGA CCTGCCACAAAAGACTGAGAACAATCGCAGGGAGAAACCAAATGGACTGTGCTCTCCTGG AGCACATGCATTAACCAGCAACAATGTGGACTTCACTAAGCCAGCACTGAAAATGAACGG AGTTGGGAAATATGCTCAGAATACAAAACTTGCAACTAATCCTCTCATCCAAAGGTCTAA GAGCAGCACTAGCCAACCACATAAGAAATACATCCAAGGTGCTGTTCATAATGGTGATGA TAGTGCATCTAGTCGACAAAATGGTACAGCAGCTCTAAGATGGAGCAGTTCTGGCAAAGC AGCTGACTATTCTAGTAACAGTTATCAGGATGGAAGACAAAATGAGTTGCCACCTGTGCT TTCTTCGGATGATCCATGGAATGCCAACAAAGCTGAGAAAGCTGACAAGGGGGCAATCTC ACCTGCAATTGTATGTATCGAGGATGATTCTGACAAAAGGTTCGAAGAAGACCTCAGAAA AGCAGTGCACCAAAGCCTCGGCACTTCAAATGGGAAAGAAGTGTATGGGGCTGGCCTTAA AAATGCTGCTGGAGAATACAACTGTTTCCTGAATGTGATTATCCAGTCATTATGGCATTT GAAGCGGTTTCGACACGAGTTCCTTAAAACATCATCACTGCATAAGCATATTGAAGATCC TTGTGCTGTCTGTGCATTATATAATATATTCGTTGACTTGAGCAAAGCATCTGAGGGGCA AGGAGAAGCTGTTGCACCTACTTCTTTGAGGATAGCTTTGAGCAAATCCTATCCTAACAA CAGGTTCTTTCAGGAGGGACAAATGAATGATGCATCTGAGGTATTGGGTGTGATCTTTGA GTGCTTGCATAAGTCGTACACTTCTCGGGCTGAGTGCCATGCTAAATCTCACGAGGGCAA TTCTATCGGCTCATGGGACTGTGCAAGCGATTTTTGCATTGCACATTGTCTTTTTGGAAT GGATGTCTATGAACGGATGAACTGCCACAATTGCGGATTAGAGTCTAGACGACTTAAGTA TACCTCATTCTTCCACAATATCAATGCTAGTTCACTTCGAACTGCAAAGATGATGTGCCT AGATCCATTTGATGATCTTTTGAAGACTGTGATAATGAATGATCAGCTAGCTTGTGATCC TGACGTTGGCGGTTGCGGAAAACCGAATCATATACACCACATTCTTTCTAGTTCCCCTCA TGTTTTTACAGTTGTTTTGGGATGGCAGAACAGCAAAGAGAGTGTTGATGACATAGCTGC AACCTTGGCTGGTATTTCGACTGAGATAGACATCAGTGTTTTCTACCGTGGTCTAGATCG AGGAAGCAAACATTTTCTTGTGTCAGTGGTTTGTTACTATGGGCAGCATTATCATTGCTT TGCTTTCGAGGATGAGCACTGGGTCATGTATGATGACCAGACTGTTAAGGTTATTGGTAG CTGGGATGATGTGGTCATTATGTGTGAGAAAGGTCATTTACAACCTCAAGTGCTCTTCTT TGAAGCTGCAAATTAATTTTCTTCAAAGTTCAAGGGTGCTGTGCTGTGCTGTGCTGTGCC GTGGTGTGGTTAACATGTCTTCCGAGATATAGGTTTTCCCGGTGACTGAGAAGGTTAGCG ATAGAATACAAAATTCGTTTTGAGCTATGGGGGATAATGGTGGTAATTTCAGCAGTTGCA CTTGCCTGTCGGTTTTGTCGAGCCCTGCCTTAAATAAATGGTCGTCCGAGCCTTTACTAA AAGGAGAGAAGTGGTGATATATATATTTTCCTTTTGGACTTTGGATATAGCCTGACCCCA TATCCTGTCGAATGCGATTTTGCCGTGGAGGACTGTAGCGGGGATAACTCTACTCGATCA TGTGCTGCCCCAGAGAAATTATTCATGAGTGCTGCTGAATTTGCTAGAAGCTTATCAATA TATACGGTTTTTTTGTGCTTACGATGTGGAGGAATGTTGTACTGTGTGTGACGAAGGGCG GGGGGTATCAAAGAAAATGGATGCTGTCATTTTTCTTTTTGTTGCAAATTCCTGGGAGGG GGTTTCTTATCATCTGTAGTGACAAAGTTGTATTATCTCAGAATGTTGTGAAGCCTGTTT TCGCTGGCCATGACGAACACGTAAAGTTATTGCTCCTGGACCTCCTGTCGCTTGTTATCT TGCTGTTTGGTGT