Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u3092399.3--103572285Partial-Overlap
BART1_0-u3090588.3.-36312299Partial-Overlap




Transcripts from Gene HORVU4Hr1G074360

TranscriptLength(bp)Description
HORVU4Hr1G074360.15470gene=HORVU4Hr1G074360 CDS=1202-4711
HORVU4Hr1G074360.25473gene=HORVU4Hr1G074360 CDS=1202-4714
HORVU4Hr1G074360.35053gene=HORVU4Hr1G074360 CDS=3-2429
HORVU4Hr1G074360.45075gene=HORVU4Hr1G074360 CDS=2-2452
HORVU4Hr1G074360.55073gene=HORVU4Hr1G074360 CDS=1-4305
HORVU4Hr1G074360.62705gene=HORVU4Hr1G074360 CDS=663-1994
HORVU4Hr1G074360.75027gene=HORVU4Hr1G074360 CDS=3-2432
HORVU4Hr1G074360.85159gene=HORVU4Hr1G074360 CDS=3-2516
HORVU4Hr1G074360.95155gene=HORVU4Hr1G074360 CDS=3-2516
HORVU4Hr1G074360.105159gene=HORVU4Hr1G074360 CDS=3-2519
HORVU4Hr1G074360.115127gene=HORVU4Hr1G074360 CDS=3-2489
HORVU4Hr1G074360.124702gene=HORVU4Hr1G074360 CDS=3-2477
HORVU4Hr1G074360.134392gene=HORVU4Hr1G074360 CDS=1-3150
HORVU4Hr1G074360.144671gene=HORVU4Hr1G074360 CDS=1-3324
HORVU4Hr1G074360.154671gene=HORVU4Hr1G074360 CDS=1-4671
HORVU4Hr1G074360.16332gene=HORVU4Hr1G074360 CDS=1-330



Exon Structure of HORVU4Hr1G074360


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g06950.1 +2 0.0 1524 934/1535 (61%) protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
TAIR PP10 AT3G47910 @ ARAPORT
AT3G47910.2 @ TAIR		 +2 8e-152 509 282/633 (45%) Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607
BRACH PP3 Bradi1g74000.4.p +2 0.0 2011 1147/1497 (77%) pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons