- Transcript HORVU4Hr1G074360.2
- Transcript IDHORVU4Hr1G074360.2
- Gene IDHORVU4Hr1G074360
Barley RTD
Exon Structure of HORVU4Hr1G074360.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109158 | - |
| chr4H | 2 | 594110196 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112801 | 594112592 | - |
| chr4H | 7 | 594112961 | 594112873 | - |
| chr4H | 8 | 594113869 | 594113771 | - |
| chr4H | 9 | 594115363 | 594115181 | - |
| chr4H | 10 | 594116068 | 594115461 | - |
| chr4H | 11 | 594116642 | 594116575 | - |
| chr4H | 12 | 594116918 | 594116730 | - |
| chr4H | 13 | 594117137 | 594117009 | - |
| chr4H | 14 | 594119638 | 594117220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +2 | 0.0 | 1524 | 934/1535 (61%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+2 | 8e-152 | 509 | 282/633 (45%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
| BRACH PP3 | Bradi1g74000.4.p | +2 | 0.0 | 2011 | 1147/1497 (77%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5473 bp)
>HORVU4Hr1G074360.2 5473 150831_barley_pseudomolecules ACCGTCGCGTTAGGTGGTGGAGGCCCACCCACAGAGACCAGAAAGAAAAAATACTCCTCC GGCGTCCATCATTTTCCTTTCATTTCCGATACACGCACGCACATTATATTGCCCCGCACA CCCGCACAACGCTTCGCCCAAATCTCATTCCCCCCCCGATGGGCCGAAAGAAGCGCAGCC CCCCACCAAACCCTACTCCGCCCCCGCCCCCGCCCGCCGGCGCCCTCGTCCTCCGCCTCG CCGATGCGCCGGCCCCGGNCTCAACGACCCCGCCGCCCGCGCGCGCCACCACCAGGCCGC CCTCCTCGCCGCGCGCCGCGCCGTCGACCTCGCGCCCGACTCCCTCGAGCTCGCCCACTT CCGCGCCCTGCTCCTCTACGACGCCGCCACCGACAACCGCGCCTACGAGGAGGTCATCGC CGAGTGCGAGCGCGGGCTCAGGATCGACGAGCCATCCGACCCGGAGCCCCACTCGCTCCG GCTCCCCGCCCCCGACCCCGACCAGCTCCGCGCCGAGCTCCGCAACCTCGTCCAGAAGGC CAATCTCGCATCCATTTCCACCTGGGTCAAGACCCTCGGCGGCTCCGATGACAAGCTCGG CTTCTTCCGCCTGGCCGATGACCCCCTGGAGCTCCAGCTCCTGCCCGCGGCCCCAGCCCC GCGCCGCCCTAACGAGATCAAGAAGGCCACCAAGACCGTCGAGGAGCGCCGCAAGGAGAT CGAGGTGCAGGTCGCCGCTCTCAGGCTGCTGGAGCAGCAGCAGCAGCAGCACAATGCCGC CGCGGCTCTCTCCTCCTCACCACCACAGTCACAGCAGGGAGATGAGCCCCCCTCCTCATC ATCTCAGTCCACCGCCTCCGGCCATCGCGCTGATCGGAGAAAGGGAGGGTCCAAAAGGGC AACAGTCTCATCGGCATCCGACCAAAGGAATCAGGTGCGTGCGTTCTTGGCCGCTCTCCC TGTTGACCGAAGGCTGGCCTTACTGAAAACTAGCATTTCTGAGCTCAAGTCGTACTACAA AACTCACAAGGACAAAGATGTTGCCGATGCGGCACCTGCGGTGCTTGATGAGGTGGTAGA GTTTGCCACTTCACACGGGTGTTGGGAGTTCTGGTTATGTGGCATCTGTGAGGAGCGCTA CCCAGATGTGGCGCATTCATTGCGGGAGCATGTGAGTGCAATACCACGTCAAGTGCAGGC TATGTTGCCACAGGAGATTGATGCTGACTGGGCAGCAATGCTCCTTGGCTCGAGCTGGAG GCCAGTGGATGTTGCTGCGGCGCTCAAAGCGCTTGAGGAAGAGCAAGGGGACAATATCGG CCAAGACAGGGACAAAGATTCAATGTCATCCGATAATTGGAGTATCAAGGACAAGTCGGA CACCTCAGAATCCTCAGCCTCGCCACACAATGAGGAGTGTGATGGTTTTGGAGTGGTAAT GAGGGAAGGTGCCCGAAAATGGCCGCTGTCTGATGATGATGAAAGAGCGAAGATTTTGGA GAGGATCCATTCATTGTTCCAAACCCTTGTGAAGCATAAAAACATTTCAGTGAACCATCT GAACAGGGTGATACAATATGCCATGGACGAACTTAGAGGGATGCCTTCTGCGTCATTGTT GCTTAACCACTCTATTGAAGAGTCGCCACTCTGCATTTGCTTCTTGGAGGCCTCATCACT GAAGAAGGTTCTCAAGTTCTTGCAAGACCTAATGCAGTCCTGTGGACTTAGTAGGTCCTC AGAGAAGGATGGCGAACTAGGTGATAGAGATTGTTTCCCCAAAAATAACACTATCCTTGA GGGTGTTACGCTGGATTCTGGTTCATCATCACTGATCCTTGATGGCCGGGTATTTGGCGG GAAGTCGAAGTCTGGTCCTGAGAATGTTGATACTGATGAATTCCTTTCGTGGCTGTATGC TGGATCTCCTCCAATAGGAGAGCAGCTATCAGAGTGGAACTGTATGCTTGTTGATAGGAC AAGTCAAGGGATGCAGATTCTTGATATGATCGACAAGGAGGCATCTGTCTTGAGAAACTT GTGTGAAATGAAGCATGAACAATTGAGCATTGAGGAGGGTGTGCTTGCTGTGAACAATAT TATACTTGAGGAGCAACGGCTAAGGGACCGTGGGGGGCGGTATTCATATCAAGGGTTCGA GGATCTCTTGAGGAACCGTCAGGAGGAGTTGTTGGAGACCAGATTTCGCAGCTCTGAGTA CGATGCAATCTCAAACATCTTGAAGGAAGTTCGCGCCTCACACTTTGGTTATGATGAAGG TTTTTCTGGGATGACCTCGCGCCAATGTGACTATGATGGGGCAGTAATAGATGATTGGAG GTTGCATGACTTTATGCACCCAAGCGATTCAGTGGTGCCGTCGATTGTTTTGAGGATGAA GGAACATGCAACTACGGAGCTTGGCAAGATAGACGCTAGGATTATGCGAAGTGTAGCTCT GATGCAGCAACTGGATCTCAAGCTTGAACCTGCTGCTTTAGTTGATTATCGATCAATTCT TCTCCCCCTCCTGAAATCCTTCTTGCGAAACCATTTGGAAGAGCTCGCGGACAAGGATGC TAGAGAGAGATCTGATGCAGCAAGAGACGCCTTTCTAGCTGAACTTGCTTTAGATGCTGA GAAGAGTGCAAACAAAGGGGTTGATAAAAAACTTACCCATGAGAAATCAAAGGACAAGAA GAGAATGAAGGATTCTAGGAGATCCAAGGATATCAAGGATTTGAGCTGGAGTGATCAATA CATTGTTCGCCAGGACAGTGCAGATGAGGAAACATCAGAGCAAGCTCAGACTCTTGTTGA TTGTGATGACTTTGACGGCAAACTTTCACTAAGTGATGAGTACTCAAATGAGCAAGAGGA AGAGCTTAGGCATAGAGTACAACTTGAAGCAGAGGAAAGAAAACTGGAGGAAACATTGGA GTACCAAAGGCGGATAGAGGAGGAGGCAAAGCAGAAGCATCTTGCCGAACAGTCCAGAAG TACTTCGTCAGCTCCTGATATTGGGACAAATGGTTATTCAACTGATGTAAATTCAAGCGT GCATCAGGATAACCATCAAAGTGCACCCAATAATGTCTCACCTGCTTATCTTGAAGGGAT AAAGTTTGGTGATTTTCGCTTTCCTAAAGTTCCCTCGCGGGAAAAGAATTCTAGTTCCGA TTTTTGTGGTGTGGACCTGCCACAAAAGACTGAGAACAATCGCAGGGAGAAACCAAATGG ACTGTGCTCTCCTGGAGCACATGCATTAACCAGCAACAATGTGGACTTCACTAAGCCAGC ACTGAAAATGAACGGAGTTGGGAAATATGCTCAGAATACAAAACTTGCAACTAATCCTCT CATCCAAAGGTCTAAGAGCAGCACTAGCCAACCACATAAGAAATACATCCAAGGTGCTGT TCATAATGGTGATGATAGTGCATCTAGTCGACAAAATGGTACAGCAGCTCTAAGATGGAG CAGTTCTGGCAAAGCAGCTGACTATTCTAGTAACAGTTATCAGGATGGAAGACAAAATGA GTTGCCACCTGTGCTTTCTTCGGATGATCCATGGAATGCCAACAAAGCTGAGAAAGCTGA CAAGGGGGCAATCTCACCTGCAATTGTATGTATCGAGGATGATTCTGACAAAAGGTTCGA AGAAGACCTCAGAAAAGCAGTGCACCAAAGCCTCGCAGGCACTTCAAATGGGAAAGAAGT GTATGGGGCTGGCCTTAAAAATGCTGCTGGAGAATACAACTGTTTCCTGAATGTGATTAT CCAGTCATTATGGCATTTGAAGCGGTTTCGACACGAGTTCCTTAAAACATCATCACTGCA TAAGCATATTGAAGATCCTTGTGCTGTCTGTGCATTATATAATATATTCGTTGACTTGAG CAAAGCATCTGAGGGGCAAGGAGAAGCTGTTGCACCTACTTCTTTGAGGATAGCTTTGAG CAAATCCTATCCTAACAACAGGTTCTTTCAGGAGGGACAAATGAATGATGCATCTGAGGT ATTGGGTGTGATCTTTGAGTGCTTGCATAAGTCGTACACTTCTCGGGCTGAGTGCCATGC TAAATCTCACGAGGGCAATTCTATCGGCTCATGGGACTGTGCAAGCGATTTTTGCATTGC ACATTGTCTTTTTGGAATGGATGTCTATGAACGGATGAACTGCCACAATTGCGGATTAGA GTCTAGACGACTTAAGTATACCTCATTCTTCCACAATATCAATGCTAGTTCACTTCGAAC TGCAAAGATGATGTGCCTAGATCCATTTGATGATCTTTTGAAGACTGTGATAATGAATGA TCAGCTAGCTTGTGATCCTGACGTTGGCGGTTGCGGAAAACCGAATCATATACACCACAT TCTTTCTAGTTCCCCTCATGTTTTTACAGTTGTTTTGGGATGGCAGAACAGCAAAGAGAG TGTTGATGACATAGCTGCAACCTTGGCTGGTATTTCGACTGAGATAGACATCAGTGTTTT CTACCGTGGTCTAGATCGAGGAAGCAAACATTTTCTTGTGTCAGTGGTTTGTTACTATGG GCAGCATTATCATTGCTTTGCTTTCGAGGATGAGCACTGGGTCATGTATGATGACCAGAC TGTTAAGGTTATTGGTAGCTGGGATGATGTGGTCATTATGTGTGAGAAAGGTCATTTACA ACCTCAAGTGCTCTTCTTTGAAGCTGCAAATTAATTTTCTTCAAAGTTCAAGGGTGCTGT GCTGTGCTGTGCTGTGCCGTGGTGTGGTTAACATGTCTTCCGAGATATAGGTTTTCCCGG TGACTGAGAAGGTTAGCGATAGAATACAAAATTCGTTTTGAGCTATGGGGGATAATGGTG GTAATTTCAGCAGTTGCACTTGCCTGTCGGTTTTGTCGAGCCCTGCCTTAAATAAATGGT CGTCCGAGCCTTTACTAAAAGGAGAGAAGTGGTGATATATATATTTTCCTTTTGGACTTT GGATATAGCCTGACCCCATATCCTGTCGAATGCGATTTTGCCGTGGAGGACTGTAGCGGG GATAACTCTACTCGATCATGTGCTGCCCCAGAGAAATTATTCATGAGTGCTGCTGAATTT GCTAGAAGCTTATCAATATATACGGTTTTTTTGTGCTTACGATGTGGAGGAATGTTGTAC TGTGTGTGACGAAGGGCGGGGGGTATCAAAGAAAATGGATGCTGTCATTTTTCTTTTTGT TGCAAATTCCTGGGAGGGGGTTTCTTATCATCTGTAGTGACAAAGTTGTATTATCTCAGA ATGTTGTGAAGCCTGTTTTCGCTGGCCATGACGAACACGTAAAGTTATTGCTCCTGGACC TCCTGTCGCTTGTTATCTTGCTGTTTGGTGTTAGTTTTAGTTTATTTTTTTTGTGCAATT AGTATCAGAATTGCCACATGGCTATGCACCCCTTTTGCAGCTATGCTGCACCCCACCAGC AACCTTACGATTC