- Transcript HORVU4Hr1G074360.15
- Transcript IDHORVU4Hr1G074360.15
- Gene IDHORVU4Hr1G074360
Barley RTD
Exon Structure of HORVU4Hr1G074360.15
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109917 | - |
| chr4H | 2 | 594110196 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112801 | 594112592 | - |
| chr4H | 7 | 594112961 | 594112873 | - |
| chr4H | 8 | 594113869 | 594113771 | - |
| chr4H | 9 | 594115225 | 594115181 | - |
| chr4H | 10 | 594115363 | 594115289 | - |
| chr4H | 11 | 594116068 | 594115461 | - |
| chr4H | 12 | 594116642 | 594116575 | - |
| chr4H | 13 | 594116918 | 594116730 | - |
| chr4H | 14 | 594117137 | 594117009 | - |
| chr4H | 15 | 594119391 | 594117220 | - |
| chr4H | 16 | 594121781 | 594121515 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +1 | 0.0 | 1548 | 954/1588 (60%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+1 | 5e-151 | 502 | 277/631 (44%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
| BRACH PP3 | Bradi1g74000.4.p | +1 | 0.0 | 2034 | 1152/1481 (78%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4671 bp)
>HORVU4Hr1G074360.15 4671 150831_barley_pseudomolecules CCGTCTCTTAAAAGGGAAAGCCTCGCTCCTCCGATGGGCCGAAAGAACCCCACCCCCGGC CCAAACCCTACTCCTCCTCCCGCGGCCGCCGTCGCCGTCGCCGGTGGCATTGCCGCCGTG CGCGCCGACTGCGACAAGGCCCTCGCGTACCTCCAGCGCGGAAACCCGTCCAAGGCGCTG CGGCTGCTGAGGGACGCCGTCGCGCGCCACTGCGAGGGGCCGCCGCCGCCGCTCCTCCTC CGCGCGCAGGGCACCGTGCACTCCCGCGCCGGCCCCGGNCTCAACGACCCCGCCGCCCGC GCGCGCCACCACCAGGCCGCCCTCCTCGCCGCGCGCCGCGCCGTCGACCTCGCGCCCGAC TCCCTCGAGCTCGCCCACTTCCGCGCCCTGCTCCTCTACGACGCCGCCACCGACAACCGC GCCTACGAGGAGGTCATCGCCGAGTGCGAGCGCGGGCTCAGGATCGACGAGCCATCCGAC CCGGAGCCCCACTCGCTCCGGCTCCCCGCCCCCGACCCCGACCAGCTCCGCGCCGAGCTC CGCAACCTCGTCCAGAAGGCCAATCTCGCATCCATTTCCACCTGGGTCAAGACCCTCGGC GGCTCCGATGACAAGCTCGGCTTCTTCCGCCTGGCCGATGACCCCCTGGAGCTCCAGCTC CTGCCCGCGGCCCCAGCCCCGCGCCGCCCTAACGAGATCAAGAAGGCCACCAAGACCGTC GAGGAGCGCCGCAAGGAGATCGAGGTGCAGGTCGCCGCTCTCAGGCTGCTGGAGCAGCAG CAGCAGCAGCACAATGCCGCCGCGGCTCTCTCCTCCTCACCACCACAGTCACAGCAGGGA GATGAGCCCCCCTCCTCATCATCTCAGTCCACCGCCTCCGGCCATCGCGCTGATCGGAGA AAGGGAGGGTCCAAAAGGGCAACAGTCTCATCGGCATCCGACCAAAGGAATCAGGTGCGT GCGTTCTTGGCCGCTCTCCCTGTTGACCGAAGGCTGGCCTTACTGAAAACTAGCATTTCT GAGCTCAAGTCGTACTACAAAACTCACAAGGACAAAGATGTTGCCGATGCGGCACCTGCG GTGCTTGATGAGGTGGTAGAGTTTGCCACTTCACACGGGTGTTGGGAGTTCTGGTTATGT GGCATCTGTGAGGAGCGCTACCCAGATGTGGCGCATTCATTGCGGGAGCATGTGAGTGCA ATACCACGTCAAGTGCAGGCTATGTTGCCACAGGAGATTGATGCTGACTGGGCAGCAATG CTCCTTGGCTCGAGCTGGAGGCCAGTGGATGTTGCTGCGGCGCTCAAAGCGCTTGAGGAA GAGCAAGGGGACAATATCGGCCAAGACAGGGACAAAGATTCAATGTCATCCGATAATTGG AGTATCAAGGACAAGTCGGACACCTCAGAATCCTCAGCCTCGCCACACAATGAGGAGTGT GATGGTTTTGGAGTGGTAATGAGGGAAGGTGCCCGAAAATGGCCGCTGTCTGATGATGAT GAAAGAGCGAAGATTTTGGAGAGGATCCATTCATTGTTCCAAACCCTTGTGAAGCATAAA AACATTTCAGTGAACCATCTGAACAGGGTGATACAATATGCCATGGACGAACTTAGAGGG ATGCCTTCTGCGTCATTGTTGCTTAACCACTCTATTGAAGAGTCGCCACTCTGCATTTGC TTCTTGGAGGCCTCATCACTGAAGAAGGTTCTCAAGTTCTTGCAAGACCTAATGCAGTCC TGTGGACTTAGTAGGTCCTCAGAGAAGGATGGCGAACTAGGTGATAGAGATTGTTTCCCC AAAAATAACACTATCCTTGAGGGTGTTACGCTGGATTCTGGTTCATCATCACTGATCCTT GATGGCCGGGTATTTGGCGGGAAGTCGAAGTCTGGTCCTGAGAATGTTGATACTGATGAA TTCCTTTCGTGGCTGTATGCTGGATCTCCTCCAATAGGAGAGCAGCTATCAGAGTGGAAC TGTATGCTTGTTGATAGGACAAGTCAAGGGATGCAGATTCTTGATATGATCGACAAGGAG GCATCTGTCTTGAGAAACTTGTGTGAAATGAAGCATGAACAATTGAGCATTGAGGAGGGT GTGCTTGCTGTGAACAATATTATACTTGAGGAGCAACGGCTAAGGGACCGTGGGGGGCGG TATTCATATCAAGGGTTCGAGGATCTCTTGAGGAACCGTCAGGAGGAGTTGTTGGAGACC AGATTTCGCAGCTCTGAGTACGATGCAATCTCAAACATCTTGAAGGAAGTTCGCGCCTCA CACTTTGGTTATGATGAAGGTTTTTCTGGGATGACCTCGCGCCAATGTGACTATGATGGG GCAGTAATAGATGATTGGAGGTTGCATGACTTTATGCACCCAAGCGATTCAGTGGTGCCG TCGATTGTTTTGAGGATGAAGGAACATGCAACTACGGAGCTTGGCAAGATAGACGCTAGG ATTATGCGAAGTGTAGCTCTGATGCAGCAACTGGATCTCAAGCTTGAACCTGCTGCTTTA GTTGATTATCGATCAATTCTTCTCCCCCTCCTGAAATCCTTCTTGCGAAACCATTTGGAA GAGCTCGCGGACAAGGATGCTAGAGAGAGATCTGATGCAGCAAGAGACGCCTTTCTAGCT GAACTTGCTTTAGATGCTGAGAAGAGTGCAAACAAAGGGGTTGATAAAAAACTTACCCAT GAGAAATCAAAGGACAAGAAGAGAATGAAGGATTCTAGGAGATCCAAGGATATCAAGGAT TTGAGCTGGAGTGATCAATACATTGTTCGCCAGGACAGTGCAGATGAGGAAACATCAGAG CAAGCTCAGACTCTTGTTGATTGTGATGACTTTGACGGCAAACTTTCACTAAGTGATGAG TACTCAAATGAGCAAGAGGAAGAGCTTAGGCATAGAGTACAACTTGAAGCAGAGGAAAGA AAACTGGAGGAAACATTGGAGTACCAAAGGCGGATAGAGGAGGAGGCAAAGCAGAAGCAT CTTGCCGAACAGTCCAGAAGTACTTCGTCAGCTCCTGATATTGGGACAAATGGTTATTCA ACTGATGTAAATTCAAGCGTGCATCAGGATAACCATCAAAGTGCACCCAATAATGTCTCA CCTGCTTATCTTGAAGGGATAAAGTTTGGTGATTTTCGCTTTCCTAAAGTTCCCTCGCGG GAAAAGAATTCTAGTTCCGATTTTTGTGGTGTGGACCTGCCACAAAAGACTGAGAACAAT CGCAGGGAGAAACCAAATGGACTGTGCTCTCCTGGAGCACATGCATTAACCAGCAACAAT GTGGACTTCACTAAGCCAGCACTGAAAATGAACGGAGTTGGGAAATATGCTCAGAATACA AAACTTGCAACTAATCCTCTCATCCAAAGGTCTAAGAGCAGCACTAGCCAACCACATAAG AAATACATCCAAGGTGCTGTTCATAATGGTGATGATAGTGCATCTAGTCGACAAAATGGT ACAGCAGCTCTAAGATGGAGCAGTTCTGTGCTTTCTTCGGATGATCCATGGAATGCCAAC AAAGCTGAGAAAGCTGACAAGGGGGCAATCTCACCTGCAATTGTATGTATCGAGGATGAT TCTGACAAAAGGTTCGAAGAAGACCTCAGAAAAGCAGTGCACCAAAGCCTCGCAGGCACT TCAAATGGGAAAGAAGTGTATGGGGCTGGCCTTAAAAATGCTGCTGGAGAATACAACTGT TTCCTGAATGTGATTATCCAGTCATTATGGCATTTGAAGCGGTTTCGACACGAGTTCCTT AAAACATCATCACTGCATAAGCATATTGAAGATCCTTGTGCTGTCTGTGCATTATATAAT ATATTCGTTGACTTGAGCAAAGCATCTGAGGGGCAAGGAGAAGCTGTTGCACCTACTTCT TTGAGGATAGCTTTGAGCAAATCCTATCCTAACAACAGGTTCTTTCAGGAGGGACAAATG AATGATGCATCTGAGGTATTGGGTGTGATCTTTGAGTGCTTGCATAAGTCGTACACTTCT CGGGCTGAGTGCCATGCTAAATCTCACGAGGGCAATTCTATCGGCTCATGGGACTGTGCA AGCGATTTTTGCATTGCACATTGTCTTTTTGGAATGGATGTCTATGAACGGATGAACTGC CACAATTGCGGATTAGAGTCTAGACGACTTAAGTATACCTCATTCTTCCACAATATCAAT GCTAGTTCACTTCGAACTGCAAAGATGATGTGCCTAGATCCATTTGATGATCTTTTGAAG ACTGTGATAATGAATGATCAGCTAGCTTGTGATCCTGACGTTGGCGGTTGCGGAAAACCG AATCATATACACCACATTCTTTCTAGTTCCCCTCATGTTTTTACAGTTGTTTTGGGATGG CAGAACAGCAAAGAGAGTGTTGATGACATAGCTGCAACCTTGGCTGGTATTTCGACTGAG ATAGACATCAGTGTTTTCTACCGTGGTCTAGATCGAGGAAGCAAACATTTTCTTGTGTCA GTGGTTTGTTACTATGGGCAGCATTATCATTGCTTTGCTTTCGAGGATGAGCACTGGGTC ATGTATGATGACCAGACTGTTAAGGTTATTGGTAGCTGGGATGATGTGGTCATTATGTGT GAGAAAGGTCATTTACAACCTCAAGTGCTCTTCTTTGAAGCTGCAAATTAA