- Transcript HORVU4Hr1G074120.3
- Transcript IDHORVU4Hr1G074120.3
- Gene IDHORVU4Hr1G074120
Barley RTD
Exon Structure of HORVU4Hr1G074120.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 593062202 | 593062076 | + |
| chr4H | 2 | 593068884 | 593066220 | + |
| chr4H | 3 | 593069956 | 593069549 | + |
| chr4H | 4 | 593070429 | 593070074 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g38900.1 | +3 | 0.0 | 1229 | 648/853 (76%) | protein|histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed |
| TAIR PP10 | AT1G73100 @ ARAPORT AT1G73100.1 @ TAIR |
+3 | 0.0 | 556 | 272/511 (53%) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669 |
| BRACH PP3 | Bradi1g53840.1.p | +3 | 0.0 | 1292 | 687/855 (80%) | pacid=32801893 transcript=Bradi1g53840.1 locus=Bradi1g53840 ID=Bradi1g53840.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3556 bp)
>HORVU4Hr1G074120.3 3556 150831_barley_pseudomolecules CCCCCCCCCTGCCGTGGCGGCGCGGCGGCGCGATTCCTTTGCTGCTCGGCGGCAGCGGCC GACGGAAGCAGCGGCCGGGGTAGCAGCGACGGCAAGGCTCGGTTCTCTCCTCTCCCTCCC AACCAAGCTTTCTCCGAAGTATGGCTTGTGGACAAGTGTAGACCTGTAGACAAAGAGACA AAGAAATTGCTGACATAAGTCCTTATTTGAGAAAGATCAGTTGTCAGCTTACAATGGCTG GAAATCAGCAGCCGGCTTCAGTTGTGTTGGATTATGCAGCAGTCCTCGACGCCAAACCCT TGCGCACACTGACCCCCATGTTCCCTGCACCGCTAGGGATGCACACTTTCACCCCTAAAA GCTCATCTTCAGTTGTCTGTGTCACCCCGTTTGGACCATATGCTGGAGGTACCGAACTGG GAATGCCTGGTGGTGTTCCGCCAATGTTAACATCACCGTCCGCTTCTGCAGATCCCAAGC AGGTGCAGCCATATACGGTTCATATGAATGGAACTTCTAATGCTAATGGTACTACAAGCA ACACAATGGTTACCCCTGTGTTGCAAACTCCTCCAGCAGTCACTACACAGGAGTCTGGTA AGAAGAAGAGGGGGATGGTTACCCCTGTGTTGCAAACTCCTCCAACAGTTACTACACAGG AGTCTGGTAAGAAGAAGAGGGGGAGGCCCAGGCGTGTGCAAGATACAACTACTGTTCCCC CGGTTCCTCCAGTTCAACCGGTTCCTACAGTTCATTCAGTTCCTTCAGCTCCTCCAGAAG TTAATAATATTGTTCTCCAGACACCTACTTCAGCCGTCTCACAGGAATCTGGTAAGAGGA AGAGGGGACGACCCAAGCGTGTGCCAGATGTTTCTGTCTTATCAACTCCAGTGCCTGTAG CAGATGGTACGCCTATTTTACAGACACCTCCTGCATCTAGTGTACATGAATCTGTTACAA AGAAAAGGGGGCGGCGATCCAAGCTTGTGCAGGATATTTCAGATACTTCAACTCCCCCAG TTCATTCAAAAGAGAGTGAGCCCTTTATGCAGACTCCTGCAGTCACCGTATTGGAGGATG GTAAGAGGAAGAGAGGGCGGCCGAAGCGTGTGCCTGATAGTTCAGTGACTCCTTCAAGTC ATTCTGTCCTTACAGTAGATGTTGACAGTGGTGACACATCAAAACGTGGCCGGCCTAGAA AAATTGACACAAGCCTATTGCACCTGCCATCTTTGTTTTCAGACGATCCCAGGGAATCCA CAGATAATATACTTATGATGTTTGATGCACTGCGACGGCGGCTCATGCAGCTGGATGAGG TGAAGCAAGTAGCAAAACAGCAGCAAAACTTGAAGGCTGGGAGTATCATGATGAGCGCTG AACTTCGCCTCAGTAAGAACAAGAGGATTGGAGAGGTTCCAGGTGTTGAGGTTGGTGACA TGTTCTACTTCAGAATTGAGATGTGCCTGGTAGGGTTAAATAGTCAGAGCATGGCAGGGA TAGATTATATGTCTGCTAAGTTTGGTAACGAGGAGGACCCCGTGGCCATTAGTATTGTGT CAGCTGGTGTGTATGAGGATGCTGAAGATAATGATCCAGATGTTCTGGTTTACAGTGGAC ATGGCATGTCTGGTAAGGATGACCAAAAGCTTGAGAGAGGTAATCTTGCACTGGAGAGAA GTTTGCATAGGGGTAATCCCATTAGAGTCGTTCGCACTGTGAAAGACTTGACTTGTTCAA CTGGTAAGATATACATATATGATGGCCTTTACAGGATCAGAGAAGCCTGGGTAGAGAAAG GTAAATCTGGTTTCAATATGTTTAAACACAAGTTGCTCAGAGAACCTGGACAACCTGATG GCATTGCAGTGTGGAAGAAGACTGAAAAATGGAGGGAAAATCCATCCTCTAGAGATCGTG TTATAGTGCACGACATATCATACGGTGTGGAAAGTAAGCCTATCTGCCTTGTAAATGAGG TTGACGATGAGAAAGGTCCTAGCCACTTCACGTATACAACTAAACTTAACTACATGAATT CCCCAAGCTCAATGAGAAAGATGCAAGGCTGCAAATGCACAAGCGTATGCCTACCCGGTG ATAACAACTGTTCTTGTACGCATCGAAATGCTGGTGACCTTCCTTACAGTGCTTCGGGCA TACTTGTTAGTCGGATGCCTATGTTATATGAGTGCAATGATTCATGCACTTGTTTACATA ATTGCCGGAACCGGGTTGTACAAAAAGGTATCAAGATCCACTTTGAGGTGTTTAAAACGG GAGATCGAGGCTGGGGCCTGCGTAGTTGGGATCCAATCCGAGCAGGCACATTCATCTGTG AATATGCAGGTGTAATTGTTGACAAGAATGCTCTTGATGCAGAAGATGATTATATCTTTG AGACCCCTCCTTCGGAGCAGAACTTAAGATGGAACTATGCACCAGAATTACTGGGTGAAC CTAGTCTTTCTGACTTAAATGAATCATCTAAGCAGTTGCCAATAATTATTAGTGCAAAAT ATACTGGTAACATAGCTCGCTTCATGAACCACAGCTGCTCACCTAATGTTTTTTGGCAAC CAGTTCTGTATGACCATGGTGATGAGGGATATCCACACATCGCATTCTTTGCAATTAAGC ATATTCCTCCAATGACAGAGCTTACATATGATTATGGTCAGAGCGGTAATTCAGGGTGTC GGAGGTCTAAAAGTTGCTTATGTTGGTCTCGCAAGTGCAGGGGTTCCTTTGGCTAAATAA TCAACCCTTAAGGGATACTTTCCTAGTTGAAGAAGCAGCTTATGGTGGCGGCGGCATTAT GGGTGTGGTGTTCCAGCCACAGTTGAAATAACTTTGCTGCCTCTTTCTATCCGGGGTTGG AATGCGGGGTAGAGTACAAACGACTAGATGTTGTAATAAAGGGCAAGCTATGCTTCTGTG GTGTTGTTAGTTGTAGTTGTCTGCTCCGGTTTAAGACCACCCAGTGGAATTCCTTCTATG TATTGTCATTGCGAAGATGTTTCAAGCCTGCAGTGAATCTATCGTTTTCGATTTGTAATC CTAGCGGATTAATGTGTCCTGTGAATCTGTGATTGCCGTGGAGAGCGAATGAAGGCAACA ATAATAATCCAGCTGGGCATTGTTCGTGCAGGGGTAAAGATAGGGGCAGAGTCAGTGCTG TGCGCTTGATTTATGATTCGATTTGGTGTGAAGGATGGTGCTCTGTTCCTATGAGCAGTA GGCTCGCTGGGATTTTGGGCTTTGCCGTGTATTTTGGTCCCTGCTTGGCATACCGTTTTC TGCACATTACAGGTGTAAAATAAATACAGACCTCCATCCACTGGTTTAGTTTCCAGCCGG AAGACACTCATGTCCAGTAAAATACACCTGTAAATTTTACATCCCTGTATTAAATTACAC CTATACCAAGCGCATCCTTAGCGTTTCATATATGAGAATCTGGTGGTTACCCTATAGTCT GTCTGGACAGCATGCATGAAATTCATTCATGAAGGAATCAACCAAAGCTCTCAAGCGACG CATATGTTCATCTAGC