- Gene HORVU4Hr1G074120
- Gene IDHORVU4Hr1G074120
- Location chr4H: 593061716 - 593070429
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u30899 | 97.8 | + | + | 8714 | -193 | Containing |
Transcripts from Gene HORVU4Hr1G074120
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU4Hr1G074120.1 | 3118 | gene=HORVU4Hr1G074120 CDS=296-2818 |
| HORVU4Hr1G074120.2 | 3612 | gene=HORVU4Hr1G074120 CDS=234-2756 |
| HORVU4Hr1G074120.3 | 3556 | gene=HORVU4Hr1G074120 CDS=234-2756 |
| HORVU4Hr1G074120.4 | 3454 | gene=HORVU4Hr1G074120 CDS=232-2754 |
| HORVU4Hr1G074120.5 | 3258 | gene=HORVU4Hr1G074120 CDS=216-2738 |
| HORVU4Hr1G074120.6 | 3293 | gene=HORVU4Hr1G074120 CDS=258-2780 |
| HORVU4Hr1G074120.7 | 3093 | gene=HORVU4Hr1G074120 CDS=167-2689 |
| HORVU4Hr1G074120.8 | 2423 | gene=HORVU4Hr1G074120 CDS=714-2423 |
| HORVU4Hr1G074120.9 | 2466 | gene=HORVU4Hr1G074120 CDS=1-2466 |
| HORVU4Hr1G074120.10 | 2463 | gene=HORVU4Hr1G074120 CDS=1-2463 |
Exon Structure of HORVU4Hr1G074120
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g38900.1 | +3 | 0.0 | 1229 | 648/853 (76%) | protein|histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed |
| TAIR PP10 | AT1G73100 @ ARAPORT AT1G73100.1 @ TAIR |
+3 | 0.0 | 556 | 272/511 (53%) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669 |
| BRACH PP3 | Bradi1g53840.1.p | +3 | 0.0 | 1292 | 687/855 (80%) | pacid=32801893 transcript=Bradi1g53840.1 locus=Bradi1g53840 ID=Bradi1g53840.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons