- Transcript HORVU4Hr1G070270.3
- Transcript IDHORVU4Hr1G070270.3
- Gene IDHORVU4Hr1G070270
Barley RTD
Exon Structure of HORVU4Hr1G070270.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 574820351 | 574819528 | + |
| chr4H | 2 | 574820541 | 574820449 | + |
| chr4H | 3 | 574820930 | 574820755 | + |
| chr4H | 4 | 574821065 | 574821019 | + |
| chr4H | 5 | 574822272 | 574822203 | + |
| chr4H | 6 | 574822810 | 574822584 | + |
| chr4H | 7 | 574822997 | 574822908 | + |
| chr4H | 8 | 574823189 | 574823114 | + |
| chr4H | 9 | 574823585 | 574823332 | + |
| chr4H | 10 | 574827612 | 574827520 | + |
| chr4H | 11 | 574829036 | 574828831 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g10460.1 | +1 | 0.0 | 526 | 289/363 (80%) | protein|expressed protein |
| TAIR PP10 | AT2G18410 @ ARAPORT AT2G18410.1 @ TAIR |
+1 | 3e-74 | 244 | 147/365 (40%) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7990768-7992588 FORWARD LENGTH=374 |
| BRACH PP3 | Bradi1g71057.2.p | +1 | 0.0 | 594 | 312/363 (86%) | pacid=32795801 transcript=Bradi1g71057.2 locus=Bradi1g71057 ID=Bradi1g71057.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2156 bp)
>HORVU4Hr1G070270.3 2156 150831_barley_pseudomolecules AGTGAATAACAGGCAATATACTATCACAAGTAAGCTAGAAAAGAATTTGCAGAAACAACA TATACTAATCTTTATAGCAAGTCCGAGCAATCATGTCGATTCAAATGAATTATGTGATTG CAGGGATGCAACTGCAAGTAGCAATACGAAACTCAGTGCCATGGGAACAACAAGCCGTCT AGCAAATTTCTTGGCAAGCGGGGGCATCAATTAGGGGGGCAAACGGACAGGAACCACAGA GACGAAGAGAGATACTGTACCTCTGAGCCAGCGGCTGCCTGGCGGGGGCGCGAACCAGCG GGAGCCTCTCCCCCGCCGCCCTCGCGCACGCCTGCATCTTCCCCGCTCTCCTCTTCTTCC CTCCTCTCGCCGCCGTCGCCGCCGCCGTCGCCGCCGCGCAGGAAACGAGCAGAGGAACCG GAGAAGCCGGGCTTAGAACAGGGAGGAGGAGTCAAACGTATCCGACATGGAAAGGGGGAG GCCGCACTCCGAGTCTGCCTGACAGGTGGGACCCACGCCGCTCCTGAGTCCCGACTTCCG GGAGCTCTGCGAAAGAGGCCAGAGGGGCTCTTGTGCAAAAGCTCCACCCTCTCGCGCTAG GGTTTAAGGTTCTGAGTCGGGAGGCGCCGCCGGCGACGACGACGGGGAGCTGAGATGGCG GACGCGGCCGTGAGGTGCCTCCGGGACGGCCGCCTCGACGGCGAGCACGCGCCAGCGCTG GCCGTGGAGGGCTCCCTCCAGTGCTGCCCCCTCGCGGCGCGCGCCATGCTCCACGTCGCC GCCGCCGTCGCCTCCAACGCGGCCGCGGGGAAGGCGCAGGCCAGGGGACTTGTGGTTGTG GCGTTTGACCGGAGCCCGGAAGTTTACCTGGATGCCATGCTTCGGCACGGCCTTGATTCG AATGCACTGAGTCGATGTGTTCGGATATTGGATTGCTACTCAGACCCACTCGGGTGGAAG AAAAATATCCGAAGTCAGCAGCATCATGAGGACAGTGGAACACCGTGCTCATCAAACAAA GGCAACATCACAATTTTCAGAAGCGTGAAGGATGTTGATAAGTTATCGTGCTCCATAATT GATCTTGGAAGAGGGTTTGAAGGAGAAGGCAAGACCTATTTTTCTGTTGCTCTCGATTCA ATTAGCTCTATGTTAAGGCATGCTTCAGTGCAATCAATTTCAGGCCTTCTTAGTAATCTT CGGAGCCATGATCAGATATCATCAATCTTCTGGCTAATGCATTCAGATCTCCATGAAACC AAGTTTTCCCGAGCTTTTGAATGCCTTTCTACCATGGTTGCTTGTGTAGAGCCAGAAGTT GTAGATTCTGTATATGGAGAAGAACGTAGGGGGGACATGTCTTTCCTTGAGCATAACTAT TCGAAAGCAAAGTTCCATGTGCGCCTGAAACGAAGGAATGGACGGGTGAAGCATCTGCAT GAGGAGTTATGTGTTGAGGGATATGATGTAAAATTTGTTTCTGCTACTTCTGTAAGTATG GAAGTGAACCAAAGTCTACTACCTAAGGTTCAGTTCAATCTTGAGCTGTCAGAAAAGGAA CGGAGTGACAGGGCAAATGTTGTTCTTCCTTTCGAACATCAAGGAAAGGGCGAGCCAATC CGTATATATGATGGACGGCGATCTCTCCCGGAGGCTCGTCAAGATCTCAATTTTACTACG GCAGCTCTCCTGGATGAAACAGAAGCTCTTAAATCTGCAGACACGAAGGGTGAAATTCAT TACCTTCGTGATTCTGATGATGAGCGACCTGACTCGGATGAAGACCCCGATGATGATTTG GATATTTAGCCACAATGTGAGCTCTGTTTATCCTAGTGGTCAGCTATCAAGTCAAAGATC CTCTTCAACGACTCCAACCAACAACGTGGTCAAATACGAGACTCTCATTCATGGTTTGCG TTTGGCCATCTCCATGGGCATTCACAAGAGGAACATCAGGCGCTTGCGAAAATTCTAGGA GGCGTTCACTTTGCGTGGGCGGCTGGAGCTACTGCATAGTTATGGTTGAACAATTTAAGC ACCTGTATTATGTATAGCTTCGTGAGCATTGGAAGGCAACCTTTGCAAATCACTGGGTTT GAAATTTCTTGGATGCTCAAGACTAATGTGTTGATGGTAGCATATCGAATGAAAGG