Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u30598	84.6	+	+	9714	-1767	Containing

Transcripts from Gene HORVU4Hr1G070270

Transcript	Length(bp)	Description
HORVU4Hr1G070270.1	2331	gene=HORVU4Hr1G070270 CDS=988-1920
HORVU4Hr1G070270.2	2424	gene=HORVU4Hr1G070270 CDS=988-1920
HORVU4Hr1G070270.3	2156	gene=HORVU4Hr1G070270 CDS=655-1809
HORVU4Hr1G070270.4	1926	gene=HORVU4Hr1G070270 CDS=969-1628
HORVU4Hr1G070270.5	1881	gene=HORVU4Hr1G070270 CDS=753-1412
HORVU4Hr1G070270.6	1679	gene=HORVU4Hr1G070270 CDS=79-969
HORVU4Hr1G070270.7	1529	gene=HORVU4Hr1G070270 CDS=1-762
HORVU4Hr1G070270.8	1412	gene=HORVU4Hr1G070270 CDS=1-1026
HORVU4Hr1G070270.9	1443	gene=HORVU4Hr1G070270 CDS=441-923
HORVU4Hr1G070270.10	825	gene=HORVU4Hr1G070270 CDS=1-435
HORVU4Hr1G070270.11	1214	gene=HORVU4Hr1G070270 CDS=2-1015
HORVU4Hr1G070270.12	1119	gene=HORVU4Hr1G070270 CDS=2-838
HORVU4Hr1G070270.13	1255	gene=HORVU4Hr1G070270 CDS=1-1017
HORVU4Hr1G070270.14	1732	gene=HORVU4Hr1G070270 CDS=292-1227
HORVU4Hr1G070270.15	1530	gene=HORVU4Hr1G070270 CDS=1-1014
HORVU4Hr1G070270.16	1506	gene=HORVU4Hr1G070270 CDS=430-1089
HORVU4Hr1G070270.17	1514	gene=HORVU4Hr1G070270 CDS=3-1004
HORVU4Hr1G070270.18	1262	gene=HORVU4Hr1G070270 CDS=408-1262
HORVU4Hr1G070270.19	1429	gene=HORVU4Hr1G070270 CDS=152-1087
HORVU4Hr1G070270.20	1424	gene=HORVU4Hr1G070270 CDS=359-841
HORVU4Hr1G070270.21	1230	gene=HORVU4Hr1G070270 CDS=69-725
HORVU4Hr1G070270.22	1680	gene=HORVU4Hr1G070270 CDS=822-1049

Exon Structure of HORVU4Hr1G070270

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g10460.1	+1	4e-163	479	241/307 (79%)	protein|expressed protein
TAIR PP10	AT2G18410 @ ARAPORT AT2G18410.1 @ TAIR	+1	2e-67	228	133/327 (41%)	Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7990768-7992588 FORWARD LENGTH=374
BRACH PP3	Bradi1g71057.2.p	+1	0.0	533	267/322 (83%)	pacid=32795801 transcript=Bradi1g71057.2 locus=Bradi1g71057 ID=Bradi1g71057.2.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons