- Transcript HORVU4Hr1G070270.18
- Transcript IDHORVU4Hr1G070270.18
- Gene IDHORVU4Hr1G070270
Barley RTD
Exon Structure of HORVU4Hr1G070270.18
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 574820541 | 574820446 | + |
| chr4H | 2 | 574820930 | 574820755 | + |
| chr4H | 3 | 574821144 | 574821019 | + |
| chr4H | 4 | 574822272 | 574822203 | + |
| chr4H | 5 | 574822810 | 574822584 | + |
| chr4H | 6 | 574822997 | 574822908 | + |
| chr4H | 7 | 574823189 | 574823112 | + |
| chr4H | 8 | 574823585 | 574823332 | + |
| chr4H | 9 | 574827664 | 574827520 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g10460.1 | +3 | 2e-79 | 196 | 110/146 (75%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g71057.2.p | +3 | 3e-75 | 239 | 128/185 (69%) | pacid=32795801 transcript=Bradi1g71057.2 locus=Bradi1g71057 ID=Bradi1g71057.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1262 bp)
>HORVU4Hr1G070270.18 1262 150831_barley_pseudomolecules CAGGGGACTTGTGGTTGTGGCGTTTGACCGGAGCCCGGAAGTTTACCTGGATGCCATGCT TCGGCACGGCCTTGATTCGAATGCACTGAGTCGATGTGTTCGGATATTGGATTGCTACTC AGACCCACTCGGGTGGAAGAAAAATATCCGAAGTCAGCAGCATCATGAGGACAGTGGAAC ACCGTGCTCATCAAACAAAGGCAACATCACAATTTTCAGAAGCGTGAAGGATGTTGATAA GTTATCGTGCTCCATAATTGATCTTGGAAGAGGGTTTGAAGGAGAAGGCAAGACCTATTT TTCTGTTGCTCTCGATTCAGTATGTACCTTGATGGAAACTTTTTTTCTTCCATGGAAACT GCAAAGCTTACTTGGGGCAGATTTTAATACAGTACTAAATTAGCTCTATGTTAAGGCATG CTTCAGTGCAATCAATTTCAGGCCTTCTTAGTAATCTTCGGAGCCATGATCAGATATCAT CAATCTTCTGGCTAATGCATTCAGATCTCCATGAAACCAAGTTTTCCCGAGCTTTTGAAT GCCTTTCTACCATGGTTGCTTGTGTAGAGCCAGAAGTTGTAGATTCTGTATATGGAGAAG AACGTAGGGGGGACATGTCTTTCCTTGAGCATAACTATTCGAAAGCAAAGTTCCATGTGC GCCTGAAACGAAGGAATGGACGGGTGAAGCATCTGCATGAGGAGTTATGTGTTGAGGGAT ATGATGTAAAATTTGTTTCTGCTACTTCTGTAAGTATGGAAGTGAACCAAAGTCTACTAC CTAAGAGGTTCAGTTCAATCTTGAGCTGTCAGAAAAGGAACGGAGTGACAGGGCAAATGT TGTTCTTCCTTTCGAACATCAAGGAAAGGGCGAGCCAATCCGTATATATGATGGACGGCG ATCTCTCCCGGAGGCTCGTCAAGATCTCAATTTTACTACGGCAGCTCTCCTGGATGAAAC AGAAGCTCTTAAATCTGCAGACACGAAGGGTGAAATTCATTACCTTCGTGATTCTGATGA TGAGCGACCTGACTCGGATGAAGACCCCGATGATGATTTGGATATTTAGCCACAATGTGA GCTCTGTTTATCCTAGTGGTCAGCTATCAAGTCAAAGATCCTCTTCAACGACTCCAACCA ACAACGTGGTCAAATACGAGACTCTCATTCATGGTTTGCGTTTGGCCATCTCCATGGGCA TTCACAAGAGGTGCGTGGCGATTCCAACCTCATTGTCTCCTAGATCACAAAGAACTTTGA AG