Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G070270.10

ChromosomeExonStartStopDirection
chr4H1574820351574820317+
chr4H2574820541574820449+
chr4H3574820930574820755+
chr4H4574821144574821019+
chr4H5574822272574822203+
chr4H6574822810574822584+
chr4H7574823000574822908+
chr4H8574823118574823114+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g10460.1 +2 2e-60 197 111/147 (76%) protein|expressed protein
TAIR PP10None-----
BRACH PP3 Bradi1g71057.2.p +2 2e-76 238 120/147 (82%) pacid=32795801 transcript=Bradi1g71057.2 locus=Bradi1g71057 ID=Bradi1g71057.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (825 bp)

>HORVU4Hr1G070270.10 825 150831_barley_pseudomolecules
GCCTCCAACGCGGCCGCGGGGAAGGCGCAGGCCAGGGGACTTGTGGTTGTGGCGTTTGAC
CGGAGCCCGGAAGTTTACCTGGATGCCATGCTTCGGCACGGCCTTGATTCGAATGCACTG
AGTCGATGTGTTCGGATATTGGATTGCTACTCAGACCCACTCGGGTGGAAGAAAAATATC
CGAAGTCAGCAGCATCATGAGGACAGTGGAACACCGTGCTCATCAAACAAAGGCAACATC
ACAATTTTCAGAAGCGTGAAGGATGTTGATAAGTTATCGTGCTCCATAATTGATCTTGGA
AGAGGGTTTGAAGGAGAAGGCAAGACCTATTTTTCTGTTGCTCTCGATTCAGTATGTACC
TTGATGGAAACTTTTTTTCTTCCATGGAAACTGCAAAGCTTACTTGGGGCAGATTTTAAT
ACAGTACTAAATTAGCTCTATGTTAAGGCATGCTTCAGTGCAATCAATTTCAGGCCTTCT
TAGTAATCTTCGGAGCCATGATCAGATATCATCAATCTTCTGGCTAATGCATTCAGATCT
CCATGAAACCAAGTTTTCCCGAGCTTTTGAATGCCTTTCTACCATGGTTGCTTGTGTAGA
GCCAGAAGTTGTAGATTCTGTATATGGAGAAGAACGTAGGGGGGACATGTCTTTCCTTGA
GCATAACTATTCGAAAGCAAAGTTCCATGTGCGCCTGAAACGAAGGAATGGACGGGTGAA
GCATCTGCATGAGGAGTTATGTGTTGAGGGATATGATGTAAAATTTGTTTCTGCTACTTC
TGTAAGTATGGAAGTGAACCAAAGTCTACTACCTAAGGTTGTTCA