- Transcript HORVU4Hr1G063820.6
- Transcript IDHORVU4Hr1G063820.6
- Gene IDHORVU4Hr1G063820
Barley RTD
Exon Structure of HORVU4Hr1G063820.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 534648750 | 534647793 | - |
| chr4H | 2 | 534648915 | 534648845 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g13970.2 | +3 | 2e-38 | 95 | 41/42 (98%) | protein|26S proteasome non-ATPase regulatory subunit 4, putative, expressed |
| TAIR PP10 | AT4G38630 @ ARAPORT AT4G38630.1 @ TAIR |
+3 | 3e-35 | 88 | 37/42 (88%) | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386 |
| BRACH PP3 | Bradi1g68290.1.p | +3 | 2e-38 | 95 | 41/42 (98%) | pacid=32803746 transcript=Bradi1g68290.1 locus=Bradi1g68290 ID=Bradi1g68290.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1029 bp)
>HORVU4Hr1G063820.6 1029 150831_barley_pseudomolecules GTTCCCCTTGTTCCCCAACCCGAACCCTCGACTGCAGCGCGACCCACAGCGGCGCAACCA TGGTGCTCGAGTCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACT ACTCGCCGTCCCGCTTCCAGGCGCAGGCCGACGCCGTCAACCTCATCTGCGGCGCCAAGA CCCAGGTACCGCGCCCCCTCCGAACCGATCGATCGATCGGGTTAGGTCTCGATGTGTGTG TGGGCTAGGGTTTTGGGTTCCGGATCTGACTTGTTTGTCGGTGGTCTCTTGCAGTCGAAC CCGGAGAATACGGTGGGCGTCATGACGATGGCCGGCAAGGGCGTGCGCGTGCTTGTCACC CCCACCAGCGACCTCGGCAAGATCCTCGCCTGTATGCACGGTAAGCTCCCGTCACTACCC GAATTTCCGCCGTTACAAAGTTTCTTATGCCTCGTACCAGCGCAGAACTCGTGTACCTAA TAGTTTAGGGTTTCAATGTAAGTATGTAAGCTCGTCGAGCTTGGATAGGATTAGATGGTG TAGCCTTTTGGATGGCGTTTGGTGATAGTACGCCCGTTAGCAGGCCTTTGTTTCGCAAAA TATACTAGCAAAAGTAGGAATTTTAGTTCTTTGACTAAGTGATCTCCAACGATTTAATGC ACAGGGCTGGAAGTTGGAGCTGAAGCAAACTTGGCTGCAGCTATTCAGGTTGCTCAGCTG GCTCTCAAGCATCGCCAGAATAAGAGGCAACAACAGAGAATTATTGTTTTCATTGGAAGG TATGTTGAGCAAATGAGCAAGATAACTTCTGTTGACCCTGTTTTGTCTGAATTACGCTAA TTTCATTGTCCTCATATCTCAGCCCTGTGAAATACGACAAGAAAGTTTTGGAGACAATAG GGAAGAAGCTGAAGAAGAATAATGTTGCCCTTGACGTTGTTGATTTTGGTGAAACTGATG ATGAAAAGCCTGAGAAACTGGAAGCGCTGATCGCTGCTGTGAACAGCAGTGATAGCAGCC ACATTGTCC