Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u30148	84.6	-	-	4225	-770	Containing

Transcripts from Gene HORVU4Hr1G063820

Transcript	Length(bp)	Description
HORVU4Hr1G063820.1	1616	gene=HORVU4Hr1G063820 CDS=1-1479
HORVU4Hr1G063820.2	1613	gene=HORVU4Hr1G063820 CDS=1-1476
HORVU4Hr1G063820.3	1201	gene=HORVU4Hr1G063820 CDS=1-1155
HORVU4Hr1G063820.4	1199	gene=HORVU4Hr1G063820 CDS=1-1197
HORVU4Hr1G063820.5	340	gene=HORVU4Hr1G063820 CDS=3-338
HORVU4Hr1G063820.6	1029	gene=HORVU4Hr1G063820 CDS=232-480
HORVU4Hr1G063820.7	189	gene=HORVU4Hr1G063820 CDS=1-189

Exon Structure of HORVU4Hr1G063820

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g13970.2	+1	0.0	516	359/407 (88%)	protein|26S proteasome non-ATPase regulatory subunit 4, putative, expressed
TAIR PP10	AT4G38630 @ ARAPORT AT4G38630.1 @ TAIR	+1	2e-114	344	184/242 (76%)	Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386
BRACH PP3	Bradi1g68290.1.p	+1	0.0	533	367/407 (90%)	pacid=32803746 transcript=Bradi1g68290.1 locus=Bradi1g68290 ID=Bradi1g68290.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons