- Transcript HORVU4Hr1G063820.3
- Transcript IDHORVU4Hr1G063820.3
- Gene IDHORVU4Hr1G063820
Barley RTD
Exon Structure of HORVU4Hr1G063820.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 534645676 | 534645622 | - |
| chr4H | 2 | 534645936 | 534645868 | - |
| chr4H | 3 | 534646135 | 534646038 | - |
| chr4H | 4 | 534646858 | 534646729 | - |
| chr4H | 5 | 534647659 | 534647368 | - |
| chr4H | 6 | 534647959 | 534647750 | - |
| chr4H | 7 | 534648157 | 534648043 | - |
| chr4H | 8 | 534648527 | 534648422 | - |
| chr4H | 9 | 534648762 | 534648637 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g13970.2 | +1 | 2e-174 | 493 | 343/388 (88%) | protein|26S proteasome non-ATPase regulatory subunit 4, putative, expressed |
| TAIR PP10 | AT4G38630 @ ARAPORT AT4G38630.1 @ TAIR |
+1 | 8e-115 | 340 | 181/242 (75%) | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386 |
| BRACH PP3 | Bradi1g68290.1.p | +1 | 4e-180 | 507 | 350/387 (90%) | pacid=32803746 transcript=Bradi1g68290.1 locus=Bradi1g68290 ID=Bradi1g68290.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1201 bp)
>HORVU4Hr1G063820.3 1201 150831_barley_pseudomolecules CTCCTTTTGCAGTCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGAC TACTCGCCGTCCCGCTTCCAGGCGCAGGCCGACGCCGTCAACCTCATCTGCGGCGCCAAG ACCCAGTCGAACCCGGAGAATACGGTGGGCGTCATGACGATGGCCGGCAAGGGCGTGCGC GTGCTTGTCACCCCCACCAGCGACCTCGGCAAGATCCTCGCCTGTATGCACGGGCTGGAA GTTGGAGCTGAAGCAAACTTGGCTGCAGCTATTCAGGTTGCTCAGCTGGCTCTCAAGCAT CGCCAGAATAAGAGGCAACAACAGAGAATTATTGTTTTCATTGGAAGCCCTGTGAAATAC GACAAGAAAGTTTTGGAGACAATAGGGAAGAAGCTGAAGAAGAATAATGTTGCCCTTGAC GTTGTTGATTTTGGTGAAACTGATGATGAAAAGCCTGAGAAACTGGAAGCGCTGATCGCT GCTGTGAACAGCAGTGATAGCAGCCACATTGTCCATGTCCCTCCGGGTGATCATGCCCTT TCTGATGTTCTTATAAGCACTCCTATCTTCACCGGTGAAGAAGGTGGAAGTGGCTTTGCT GCTTCTGCAGCTGCTGCTGCAGCCACTGGAGCTACTGGGTATGATTTTGGCGTGGACCCA AATGTGGATCCAGAGTTGGCACTTGCCCTACGGTTGTCTATGGAGGAAGAGCGAGCTAGG CAAGAGGCTATCGCGAAAAAAGCTGCAGAAGACAACAAGGATCAGGCCTCAAGCTCTACT GATGCTATTATGGCTGAAGCGGAACTTACCTTAAATGCTCCTGCTGATGTTGACGCAGAT CTACTGAAGGATGATGATGATGCTCAGCTATTACAGCAAGCACTTGCTATGTCAATGGAT GAGGGAGCTTCAGGAGCTGCAGCCGTGGCTGATGCTGCTATGGCAGAAGCTGCTGCAGAT GACCAGGATTTGGCATTGGCTCTTCAAATGTCTGTTCAGGACGCAGAGGCGTCTGGTCAA TCTGATATGAGCAAAGTGTTTGAAGACAGATCATTTGTGACATCCATCCTTAATTCGCTT CCTGGTGTTGACCCCAATGACCCATCTGTGAAAGATCTACTGGCATCTTTGCATGGCCAA GGAGAGACAAGGTAGAATGCTGAACTTGTTAAAGAGTTTCGACACATAGTCACGTCCATA A