- Transcript HORVU4Hr1G063820.1
- Transcript IDHORVU4Hr1G063820.1
- Gene IDHORVU4Hr1G063820
Barley RTD
Exon Structure of HORVU4Hr1G063820.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 534645025 | 534644908 | - |
| chr4H | 2 | 534645366 | 534645291 | - |
| chr4H | 3 | 534645936 | 534645868 | - |
| chr4H | 4 | 534646135 | 534646038 | - |
| chr4H | 5 | 534646858 | 534646729 | - |
| chr4H | 6 | 534647659 | 534647368 | - |
| chr4H | 7 | 534647959 | 534647750 | - |
| chr4H | 8 | 534648157 | 534648043 | - |
| chr4H | 9 | 534648527 | 534648422 | - |
| chr4H | 10 | 534648750 | 534648637 | - |
| chr4H | 11 | 534649132 | 534648845 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g13970.2 | +1 | 0.0 | 516 | 359/407 (88%) | protein|26S proteasome non-ATPase regulatory subunit 4, putative, expressed |
| TAIR PP10 | AT4G38630 @ ARAPORT AT4G38630.1 @ TAIR |
+1 | 2e-114 | 344 | 184/242 (76%) | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386 |
| BRACH PP3 | Bradi1g68290.1.p | +1 | 0.0 | 533 | 367/407 (90%) | pacid=32803746 transcript=Bradi1g68290.1 locus=Bradi1g68290 ID=Bradi1g68290.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1616 bp)
>HORVU4Hr1G063820.1 1616 150831_barley_pseudomolecules GTACTGGCAAACAAAATCGAGACTAGACCCATGGTGACTTTCTTTTATGGGTCTACAAAT CAGGCCCAACAGGTCAGAAAGCAGTCCGGTTCCACCGCGGGCCGGACCGAGGCGTACCAA GTCTCGAATCGGTTTCCTCCACAGAAAGCAATCCACGTCCACCAAGGCGACGCCGCAAAT AAGAACTCCAGCCCTCTCCTCCCCCTTGGATCAGTTTGTTCCCCTTGTTCCCCAACCCGA ACCCTCGACTGCAGCGCGACCCACAGCGGCGCAACCATGGTGCTCGAGTCGACGATGATC TGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCCCGCTTCCAGGCG CAGGCCGACGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGTCGAACCCGGAGAATACG GTGGGCGTCATGACGATGGCCGGCAAGGGCGTGCGCGTGCTTGTCACCCCCACCAGCGAC CTCGGCAAGATCCTCGCCTGTATGCACGGGCTGGAAGTTGGAGCTGAAGCAAACTTGGCT GCAGCTATTCAGGTTGCTCAGCTGGCTCTCAAGCATCGCCAGAATAAGAGGCAACAACAG AGAATTATTGTTTTCATTGGAAGCCCTGTGAAATACGACAAGAAAGTTTTGGAGACAATA GGGAAGAAGCTGAAGAAGAATAATGTTGCCCTTGACGTTGTTGATTTTGGTGAAACTGAT GATGAAAAGCCTGAGAAACTGGAAGCGCTGATCGCTGCTGTGAACAGCAGTGATAGCAGC CACATTGTCCATGTCCCTCCGGGTGATCATGCCCTTTCTGATGTTCTTATAAGCACTCCT ATCTTCACCGGTGAAGAAGGTGGAAGTGGCTTTGCTGCTTCTGCAGCTGCTGCTGCAGCC ACTGGAGCTACTGGGTATGATTTTGGCGTGGACCCAAATGTGGATCCAGAGTTGGCACTT GCCCTACGGTTGTCTATGGAGGAAGAGCGAGCTAGGCAAGAGGCTATCGCGAAAAAAGCT GCAGAAGACAACAAGGATCAGGCCTCAAGCTCTACTGATGCTATTATGGCTGAAGCGGAA CTTACCTTAAATGCTCCTGCTGATGTTGACGCAGATCTACTGAAGGATGATGATGATGCT CAGCTATTACAGCAAGCACTTGCTATGTCAATGGATGAGGGAGCTTCAGGAGCTGCAGCC GTGGCTGATGCTGCTATGGCAGAAGCTGCTGCAGATGACCAGGATTTGGCATTGGCTCTT CAAATGTCTGTTCAGGACGCAGAGGCGTCTGGTCAATCTGATATGAGCAAAGTGTTTGAA GACAGATCATTTGTGACATCCATCCTTAATTCGCTTCCTGGTGTTGACCCCAATGACCCA TCTGTGAAAGATCTACTGGCATCTTTGCATGGCCAAGGAGAGCAGGAGAAGAAAGATGAG GCGGACAAGACAGACAAGCCTGAAGATGGGAAGAACTAAAGTCCCTTTGTTGCTTCATGC ACATGAAGAAGGGAAGAAGATTGCCTGCATTAGCTGCTTTTACACTTGGGCTATGAATTT ACTTGATCCTCTTGTAACTGCGTTGACGATAACTCAAATGCCGAGAGAATTTGTAT