- Transcript HORVU4Hr1G060940.6
- Transcript IDHORVU4Hr1G060940.6
- Gene IDHORVU4Hr1G060940
Barley RTD
Exon Structure of HORVU4Hr1G060940.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 511456072 | 511455910 | + |
| chr4H | 2 | 511457495 | 511457229 | + |
| chr4H | 3 | 511458147 | 511457592 | + |
| chr4H | 4 | 511458642 | 511458273 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g15890.2 | +2 | 5e-43 | 155 | 71/81 (88%) | protein|RNA recognition motif containing protein, expressed |
| TAIR PP10 | AT1G07350 @ ARAPORT AT1G07350.2 @ TAIR |
+2 | 1e-36 | 130 | 62/90 (69%) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2258816-2259586 REVERSE LENGTH=129 |
| BRACH PP3 | Bradi1g67145.1.p | +2 | 5e-47 | 166 | 77/82 (94%) | pacid=32805382 transcript=Bradi1g67145.1 locus=Bradi1g67145 ID=Bradi1g67145.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1356 bp)
>HORVU4Hr1G060940.6 1356 150831_barley_pseudomolecules CTCTCCAGAACCTTCCGGCAGGTCCTCTCTATTTATTCACACGAGCGCGCGTGCACCATC CAACGGGAAAAGAGAGGCGGTGGTCGCAGGTCGGAACTGACGGAGGCAGAGGCGAAGACG AAGACAGAGACTCGAGAGGCCTCGCAGCGGCGACGAATCAAAGATGTCGTATTCGAGGTA CAGGAGTCGTTCAAGGTAAACATTCTTTATCCTCAGAAATGCTAATATTATGTTTGTGTC CATGTTCTATGATTTTTGGAGTCTAGGCAGTTCTGGCTCTAATTTTGAGGAGTACATGAT ATCCATGTAATGTGTTAGGAGTGTGGACTCGAGTGATGTTGAGAACCCTGGGAACAATCT CTTTGTGACTGGTTTATCATCTCGTCTAACTGATCGAGATCTGGAGAAGCATTTCTCTAC AGAGGGAGAGGTGATTGATGCAAGTATTGTACTTGATCCATGGACAAGGGAATCACGGGG ATTTGGATTTGTTACCATGGCCAATCTTAAGGAGGCAGAACGCTGCATCAAATATCTCGA CAGTTCAGTGCTGGAAGGTCGTGTCATTACTGTTGAGAAGGTATTGCCAAAAGATTGTTA ACTCTGATATTTGTCCATTCTCCTTCTATATAGAGTGGAACTATTATGTACAGATTAGCC TTCCAAGCTGAATATTTGAGTGCTCTTCTTGTTTGAAGATTTTGTTGACAGCAGCAGGTT GATGCCCGCAGCTGTATGGCATCAAATTCAAAAGATACACAACCTAAGATCGAAACAATG CTACCTCAACCAAAGGGTTGTACGCCCACCGTTATTTTATTTTTCTGTATTATTTGTGTA GTTCAGATCCCCAATAATTTATCCAGTCTTGCTTTTGACATAAAACACAATTACTGATTT GGAGCCCCCTTCTCCACCACAGGCAAAGAGAAGACGAGGTCGAACCCCAACACCGGGAAG GTACCTTGGCAGCAAATCATCGCGTCGAAGGAGGTATTCCCGAAGCAGGTCACCTGTTAG GAGAGACCGTTACGGCTCACGCTACCCGCCCGAGCTAGAACGTTCTTATTCTCCTTATCG CAGAGGACGATCATACTCTCGTCATGACAGGCATAGATCATACTCCCCCTATGGAAGGAG GCCATCCTACTCCCCCTATGAAAGGAGGCCATCCTACTCTCCCTATGGCAGAAGGAGATC ATACTCTCCTTCCGACAGGTCGGAGTCTCCCTACCACAGGCGTAGATCCTACTCACCCTA CGACAGGCGTCACTCACCCCGCTATGGTCATCGCCACCGTTCAAGATCCCCATACAGTTA CAGAAGGCGGAGGTCATGCTCCCATGACCGTTATGT