Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u29974	99.3	+	+	6678	-47	Partial-Overlap

Transcripts from Gene HORVU4Hr1G060940

Transcript	Length(bp)	Description
HORVU4Hr1G060940.1	1985	gene=HORVU4Hr1G060940 CDS=230-544
HORVU4Hr1G060940.2	1858	gene=HORVU4Hr1G060940 CDS=229-543
HORVU4Hr1G060940.3	1866	gene=HORVU4Hr1G060940 CDS=229-546
HORVU4Hr1G060940.4	970	gene=HORVU4Hr1G060940 CDS=433-537
HORVU4Hr1G060940.5	4823	gene=HORVU4Hr1G060940 CDS=213-1214
HORVU4Hr1G060940.6	1356	gene=HORVU4Hr1G060940 CDS=497-601
HORVU4Hr1G060940.7	1234	gene=HORVU4Hr1G060940 CDS=3-479
HORVU4Hr1G060940.8	943	gene=HORVU4Hr1G060940 CDS=493-942
HORVU4Hr1G060940.9	1110	gene=HORVU4Hr1G060940 CDS=3-443
HORVU4Hr1G060940.10	767	gene=HORVU4Hr1G060940 CDS=2-766
HORVU4Hr1G060940.11	882	gene=HORVU4Hr1G060940 CDS=127-444
HORVU4Hr1G060940.12	1670	gene=HORVU4Hr1G060940 CDS=104-418
HORVU4Hr1G060940.13	1626	gene=HORVU4Hr1G060940 CDS=2-370
HORVU4Hr1G060940.14	1474	gene=HORVU4Hr1G060940 CDS=3-344
HORVU4Hr1G060940.15	168	gene=HORVU4Hr1G060940 CDS=59-151
HORVU4Hr1G060940.16	927	gene=HORVU4Hr1G060940 CDS=176-493
HORVU4Hr1G060940.17	767	gene=HORVU4Hr1G060940 CDS=139-453
HORVU4Hr1G060940.18	1059	gene=HORVU4Hr1G060940 CDS=73-1059
HORVU4Hr1G060940.19	1051	gene=HORVU4Hr1G060940 CDS=55-456

Exon Structure of HORVU4Hr1G060940

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g15880.4	-2	0.0	427	221/260 (85%)	protein|coronatine-insensitive protein, putative, expressed
TAIR PP10	AT2G39940 @ ARAPORT AT2G39940.1 @ TAIR	-2	1e-130	326	169/262 (65%)	Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592
BRACH PP3	Bradi1g67160.1.p	-2	0.0	466	239/260 (92%)	pacid=32806713 transcript=Bradi1g67160.1 locus=Bradi1g67160 ID=Bradi1g67160.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons