- Transcript HORVU4Hr1G060940.5
- Transcript IDHORVU4Hr1G060940.5
- Gene IDHORVU4Hr1G060940
Barley RTD
Exon Structure of HORVU4Hr1G060940.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 511456072 | 511455861 | + |
| chr4H | 2 | 511457260 | 511457229 | + |
| chr4H | 3 | 511457495 | 511457384 | + |
| chr4H | 4 | 511457741 | 511457592 | + |
| chr4H | 5 | 511458147 | 511458084 | + |
| chr4H | 6 | 511462525 | 511458273 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g15880.4 | -2 | 0.0 | 427 | 221/260 (85%) | protein|coronatine-insensitive protein, putative, expressed |
| TAIR PP10 | AT2G39940 @ ARAPORT AT2G39940.1 @ TAIR |
-2 | 1e-130 | 326 | 169/262 (65%) | Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592 |
| BRACH PP3 | Bradi1g67160.1.p | -2 | 0.0 | 466 | 239/260 (92%) | pacid=32806713 transcript=Bradi1g67160.1 locus=Bradi1g67160 ID=Bradi1g67160.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4823 bp)
>HORVU4Hr1G060940.5 4823 150831_barley_pseudomolecules CGTACACTAAGCCGATTCAACCGGATTTGAGAAAGTCTCGCGTCCGGCCCTCTCCAGAAC CTTCCGGCAGGTCCTCTCTATTTATTCACACGAGCGCGCGTGCACCATCCAACGGGAAAA GAGAGGCGGTGGTCGCAGGTCGGAACTGACGGAGGCAGAGGCGAAGACGAAGACAGAGAC TCGAGAGGCCTCGCAGCGGCGACGAATCAAAGATGTCGTATTCGAGGTACAGGAGTCGTT CAAGGAGTGTGGACTCGAGTGATGTTGAGAACCCTGGGAACAATCTCTTTGTGACTGGTT TATCATCTCGTCTAACTGATCGAGATCTGGAGAAGCATTTCTCTACAGAGGGAGAGGTGA TTGATGCAAGTATTGTACTTGATCCATGGACAAGGGAATCACGGGGATTTGGATTTGTTA CCATGGCCAATCTTAAGGAGGCAGAACGCTGCATCAAATATCTCGACAGTTCAGTGCTGG AAGGTCGTGTCATTACTGTTGAGAAGGCAAAGAGAAGACGAGGTCGAACCCCAACACCGG GAAGGTACCTTGGCAGCAAATCATCGCGTCGAAGGAGGTATTCCCGAAGCAGGTCACCTG TTAGGAGAGACCGTTACGGCTCACGCTACCCGCCCGAGCTAGAACGTTCTTATTCTCCTT ATCGCAGAGGACGATCATACTCTCGTCATGACAGGCATAGATCATACTCCCCCTATGGAA GGAGGCCATCCTACTCCCCCTATGAAAGGAGGCCATCCTACTCTCCCTATGGCAGAAGGA GATCATACTCTCCTTCCGACAGGTCGGAGTCTCCCTACCACAGGCGTAGATCCTACTCAC CCTACGACAGGCGTCACTCACCCCGCTATGGTCATCGCCACCGTTCAAGATCCCCATACA GTTACAGAAGGCGGAGGTCATGCTCCCATGACCGTTATGTTTCAGCATACTACAGCAGGC GCTATTCTCCAAGGAACAGAAGACGGAGTTACTCTCGCAGCGTATCACCACGCAGGAGCT ACTCCCGTAGCTGCTCCCTGGCGTCAGAAGAATCAAGGAGCTGTTCTCCGCAGAAAGGAT ATGCTGAAAGCAAGGCATCGCGCAGCAGGTCACCTGCGATTGCGAAGAGGCGTTCTAGAG AAAGCTATGCGCACAGCCGCAGTTCATGCTCGAGGTCCGTCTCCAGGGAGCGCTCAACCT CATCAAGCACCTGATGGTTTACAAAGTGCCTTGATGACTTTGGATGTTTGTAAACAATGT GGATGGTATGATCGTGTACCTAGTGAAGCAGCTGTATTTCGTCATCGTTAACATCTTAAA TTGCAGTCTGCTTCCATACTATAGGAGAAAAATGCAGAAAATTTCCTACAGATTGCCTAT TCCACAAGGATTTTATAGCATACTTCTACAACGGAAAAAACGCAGAAATTTTCATAAATA TTGGCGAGGTCATTTCTTTGTTTCAGATGACCCAGTGCGGATTTTTCTATAGGAATTCGA TACTGCAATTTTCCTTTGTTTATAAGATCTCTAACTCAAACCTCATTTTATTATTCTTTG ACAAGTTGAATACACTTTCACTGTATTTACCCTCTCCTCAATCCTCTAAAGTTGCTTCCT GTGCAAAAGCATATCTTTCTCTACCTTCTCCTCTGTCCTCTCTTAAATTCCTTCCTGGCA AAACCTTACATATCAGAATCTCTGTGTTCTGTAGACTTTCACGATAAGTATTTTGAAATC ATGTAAAATTTCACAGCAAGTGACATCTCAATGCAAAAAAGAAAAGGTCACCACTCGATA GTACCAGATAACTTCACACGCCTATAACAACCAGTTCACCATACAGAGCCACAGATTAAG AGAAGCCGGATAATTGCGACCAGAAAAACTGAGGCCAAGCCACAGCAAAATATCAAGATA GTCATAACATTGCGCAGAGAGGTTTACAGATGGTACAACAACTAAAGGAATACTGTTCGT AGAACAACAATACAGTGGGCAAAGGTTCAAGAACAGAAAAATGCCATTACAACTGGGCAC ATTATTAGAAAATGTGTGTCCGAGCCTTGTCAAAATGGGTGTAGTACACAGAGATATCCA TGTTGGCCAGATGAGCAGCTTACCCAGGAATGTTGCCCCTCAAATACGAAGACAATTCAG AGGGGGTCGCTTTTAGTCGAGCTTTCAGTTCCATAATGGCACTGTGGGATGGAATGTCCC TATGTGCCGTATTGTGGGTTTTGCTGGCATCAAACATGTATGTACAGTCAAACTGATGGT CTTTTTAGCTTCCGACTGACGGATAGAGGGGAATTACTGACATGGGACAATCTGTCCTTG CCCCAGCTAGAGAGTAGTACGCCAGAACCTGTGCCTGACCCTCTGGGCAAGGCTCACTTT GATTTGGCGCAATAAACTCAATGTTCCAGAAGGGGCGTACCATTGCCATGAGATCGGTGC CAGTAGAAGATGCCTTGTATCCCTGCACCCATAGATATCTGAGTGACTTCAGCTGTAAGG CCGCAACTGCCAATGTACGTTCACTAAAGCAGCAACTCCTTAGCTCCAATTTCTGCAAGC TTGGGCATCCTCGTGCGAATGCCAGCAGCCCATCATCAGATCCCCCGACATTACCAAGCA ACATGTAGCGGACGGTCTTGCTAAATTCACCAACATAGTTAAGGCCAATATCTGATAGAG CTCCAGGTCTCACATAAAATGCAAACCTCCGGAGTTTGGTGCAACCTCTCAGCAAAGCCC GAACCCCGTTGTCAAGTGGCAGGTCAGCTATATGCACCTCTCTATCAAGCAGGACAAGTC GGAAATCGTTCAGGTTTTTGCTGAACGTACCAATGGCCTCAAGAGCTACATTTGTAATGT CAGACACATGTACTGCCCAGTACTCCAAATCAGGACAGCCTTGAGCTACAGCCATCAATC CTACTTGTGTCACTCTACCTTGTTCGTCCTCGAGACCTCCTTGATCATCGTCTCCTCTCT CGACTCTGAGTCGATGTAATTTCTTGCAGGTCTGTGCAACAACTTCTAACCCTCGATCTC CTATCACATCCCTCACCTGTTGGAAGACAAAAAATTATCAACAAAACGCGTTTGAGATAG CATATCCACTACCCGACCTCCAGGAAGGAAATATGGCGAAAACATTTAAAATAATTTGCC AGGACATACCTCCAGAACTTCTAGATTTGGGCAGCGCTGGACTAATTGACAGTGATCCTC TGTAGTAAGGAATGTAAACTGAAGGTCTAACTTCTTGAGTGTGGCGCCATATGGAAATAA TATCTGCATCTCATTTGTTCCCATGTAGAGCAAACTCAAGCGCTGTACCGAAGGAGGGAA ATAGTAGTTAGCATAATTGCCACCTTGATCTTGATCATCGAAGGAACCACCAGCAAAGTC TTGTAGTGTTTCTGCTGTGCGGAACAAGTCGACCAGGTCAGACATGAAACAGTCGCTAAT CTTGAGTGTTTTCAGCCTTCGGCAATTTCGCACAAGGAGGAGAAGATGTGCAGGGGATGC CCTGAGATCTGTCAGAAAGAAATTCAGCGTCTCAAGGACAGTATTGCTGGTAGCAAGCTC GCGGAGCCATTCATCATTTTCTTTCTCAGCAACGGAGCTTTCTTCAAGAAACAACGTTTC CAGTTTCCTGCACATGACAAGAAATATGATTAATTAAACCAGTAACCTATGAATGTATGC TCTTGCAGTCTAATTAAACTTCTACAACAGCATTTCAATAATCTGCTTTCCAAAACTATC TCTGCCAAGTATCATAGTTCTCTAAGAAAGTATAAGCAATTAAGCAAAGTCCCAAATTCA GCAAGGCAGTTAAAGTCCAGATTTCCTAATTCCTGCTCCAAAGCTAGAATTATTCCCAAA TTACAAAGAGTGCCACGATGTTTTACATCATGAAAAGGTGAGACGCTACACTTACTTTTC CCCTTCCCAAATGAACAAAAGAACACCTTATATATACTCGCTTTACAAACATCCCATCCA CCAACCATTTCCAAATAGAACAAAACACAATTTCAGAAGAGAAAAACTAACTAGGATAAC TGAAACTAGAAATTAATTCGTAGGACAAGAAAGAGGTGCTGCAATAATTAATAATAAACG AGCTAATGCATCCATGCATATCATTTGTGAACCGGAACAAGGAGGGGAGAAATTACTTGC AGCGGCGGGCGACGAGAGCAAGGGAAGGCGTAGAGAAGCCGGAGCAGCGGTCAAGCTTGA GGGATACGAGCATGTGGGCCTTGGCGCGCACGAGCACTGCGAGGTCGTCGTTGGAGACAA TCATCCGGCGGAGATGCAGCACCTTGAGGAACTGGAAGGAGGCGGAGAGCTCGCGGATCC AGGGCGAGGCGTAGCCGCCCCAGTCCTCGGGGATGAGGTTGAACATGGCGGCGCGGGGCT TGGCCTTGAGCTTGAGCGACTCGAGGCAGGGGAAGCGGCGGAAGAGGCGGTCGGGGGTGG TGGAGTAGGCCATGGCGATGGTGACGTGCTTGCGGCTGAGCGCGTCGACCTTGCACCAGT GGCGGCAGACGAGCGAGATGGCGTCGCGGTCCCAGGGGTCCTCCACGCACCCCATGACGA GCCCCAGCGCCACGTCCGGGATCCCGAAGCTCATGGTCCTCCCCAGGTGCCGCTCGTCGC CGCTCATCGCCGGGAGCAGGACCCCGATCTGCCTGCGCTGCGCCCGCCGCGGATTTCAAC GGGGGTTGGGATGAGGTTGAGGGGAGGGCGTCCGTGCGCGTGCGTCCGGGTGTAGAGTGG GAAGGGAAAAGGGAAAGGAGGGG