Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G060940.16

ChromosomeExonStartStopDirection
chr4H1511457260511457054+
chr4H2511457495511457384+
chr4H3511457741511457592+
chr4H4511457957511457860+
chr4H5511458147511458084+
chr4H6511458568511458273+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g15890.2 +2 2e-44 155 71/81 (88%) protein|RNA recognition motif containing protein, expressed
TAIR PP10 AT1G07350 @ ARAPORT
AT1G07350.2 @ TAIR		 +2 7e-36 125 56/82 (68%) Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2258816-2259586 REVERSE LENGTH=129
BRACH PP3 Bradi1g67145.1.p +2 2e-47 162 76/81 (94%) pacid=32805382 transcript=Bradi1g67145.1 locus=Bradi1g67145 ID=Bradi1g67145.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (927 bp)

>HORVU4Hr1G060940.16 927 150831_barley_pseudomolecules
CGGAGCTTCTATGGTCAGGTTAATTAGATAATTGTATGATCTATTGGGGCTATGCGGTAT
ACTATGTTACAAAGTCATGGCACATTTAGAAATTTAGTTAGATGCTACTTTCTCTTTGTG
TTTTCTATACGAGTCCTCTGGTAGGTATTGATTCATTTGCCTGTATGTCTTGCAGATGTC
GTATTCGAGGTACAGGAGTCGTTCAAGGAGTGTGGACTCGAGTGATGTTGAGAACCCTGG
GAACAATCTCTTTGTGACTGGTTTATCATCTCGTCTAACTGATCGAGATCTGGAGAAGCA
TTTCTCTACAGAGGGAGAGGTGATTGATGCAAGTATTGTACTTGATCCATGGACAAGGGA
ATCACGGGGATTTGGATTTGTTACCATGGCCAATCTTAAGGAGGCAGAACGCTGCATCAA
ATATCTCGACAGTTCAGTGCTGGAAGGTCGTGTCATTACTGTTGAGAAGATTTTGTTGAC
AGCAGCAGGTTGATGCCCGCAGCTGTATGGCATCAAATTCAAAAGATACACAACCTAAGA
TCGAAACAATGCTACCTCAACCAAAGGGCAAAGAGAAGACGAGGTCGAACCCCAACACCG
GGAAGGTACCTTGGCAGCAAATCATCGCGTCGAAGGAGGTATTCCCGAAGCAGGTCACCT
GTTAGGAGAGACCGTTACGGCTCACGCTACCCGCCCGAGCTAGAACGTTCTTATTCTCCT
TATCGCAGAGGACGATCATACTCTCGTCATGACAGGCATAGATCATACTCCCCCTATGGA
AGGAGGCCATCCTACTCCCCCTATGAAAGGAGGCCATCCTACTCTCCCTATGGCAGAAGG
AGATCATACTCTCCTTCCGACAGGTCGGAGTCTCCCTACCACAGGCGTAGATCCTACTCA
CCCTACGACAGGCGTCACTCACCCCGC