- Transcript HORVU4Hr1G060940.13
- Transcript IDHORVU4Hr1G060940.13
- Gene IDHORVU4Hr1G060940
Barley RTD
Exon Structure of HORVU4Hr1G060940.13
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 511456072 | 511456022 | + |
| chr4H | 2 | 511457261 | 511457229 | + |
| chr4H | 3 | 511457495 | 511457384 | + |
| chr4H | 4 | 511457741 | 511457592 | + |
| chr4H | 5 | 511458147 | 511457860 | + |
| chr4H | 6 | 511459264 | 511458273 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g15890.2 | +2 | 2e-42 | 156 | 71/80 (89%) | protein|RNA recognition motif containing protein, expressed |
| TAIR PP10 | AT1G07350 @ ARAPORT AT1G07350.2 @ TAIR |
+2 | 3e-34 | 126 | 56/82 (68%) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2258816-2259586 REVERSE LENGTH=129 |
| BRACH PP3 | Bradi1g67145.1.p | +2 | 3e-45 | 163 | 76/80 (95%) | pacid=32805382 transcript=Bradi1g67145.1 locus=Bradi1g67145 ID=Bradi1g67145.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1626 bp)
>HORVU4Hr1G060940.13 1626 150831_barley_pseudomolecules CGAAGACGAAGACAGAGACTCGAGAGGCCTCGCAGCGGCGACGAATCAAAGATGTCGTAT TCGAGGTACAGGAGTCGTTCAAGGGAGTGTGGACTCGAGTGATGTTGAGAACCCTGGGAA CAATCTCTTTGTGACTGGTTTATCATCTCGTCTAACTGATCGAGATCTGGAGAAGCATTT CTCTACAGAGGGAGAGGTGATTGATGCAAGTATTGTACTTGATCCATGGACAAGGGAATC ACGGGGATTTGGATTTGTTACCATGGCCAATCTTAAGGAGGCAGAACGCTGCATCAAATA TCTCGACAGTTCAGTGCTGGAAGGTCGTGTCATTACTGTTGAGAAGATTTTGTTGACAGC AGCAGGTTGATGCCCGCAGCTGTATGGCATCAAATTCAAAAGATACACAACCTAAGATCG AAACAATGCTACCTCAACCAAAGGGTTGTACGCCCACCGTTATTTTATTTTTCTGTATTA TTTGTGTAGTTCAGATCCCCAATAATTTATCCAGTCTTGCTTTTGACATAAAACACAATT ACTGATTTGGAGCCCCCTTCTCCACCACAGGCAAAGAGAAGACGAGGTCGAACCCCAACA CCGGGAAGGTACCTTGGCAGCAAATCATCGCGTCGAAGGAGGTATTCCCGAAGCAGGTCA CCTGTTAGGAGAGACCGTTACGGCTCACGCTACCCGCCCGAGCTAGAACGTTCTTATTCT CCTTATCGCAGAGGACGATCATACTCTCGTCATGACAGGCATAGATCATACTCCCCCTAT GGAAGGAGGCCATCCTACTCCCCCTATGAAAGGAGGCCATCCTACTCTCCCTATGGCAGA AGGAGATCATACTCTCCTTCCGACAGGTCGGAGTCTCCCTACCACAGGCGTAGATCCTAC TCACCCTACGACAGGCGTCACTCACCCCGCTATGGTCATCGCCACCGTTCAAGATCCCCA TACAGTTACAGAAGGCGGAGGTCATGCTCCCATGACCGTTATGTTTCAGCATACTACAGC AGGCGCTATTCTCCAAGGAACAGAAGACGGAGTTACTCTCGCAGCGTATCACCACGCAGG AGCTACTCCCGTAGCTGCTCCCTGGCGTCAGAAGAATCAAGGAGCTGTTCTCCGCAGAAA GGATATGCTGAAAGCAAGGCATCGCGCAGCAGGTCACCTGCGATTGCGAAGAGGCGTTCT AGAGAAAGCTATGCGCACAGCCGCAGTTCATGCTCGAGGTCCGTCTCCAGGGAGCGCTCA ACCTCATCAAGCACCTGATGGTTTACAAAGTGCCTTGATGACTTTGGATGTTTGTAAACA ATGTGGATGGTATGATCGTGTACCTAGTGAAGCAGCTGTATTTCGTCATCGTTAACATCT TAAATTGCAGTCTGCTTCCATACTATAGGAGAAAAATGCAGAAAATTTCCTACAGATTGC CTATTCCACAAGGATTTTATAGCATACTTCTACAACGGAAAAAACGCAGAAATTTTCATA AATATTGGCGAGGTCATTTCTTTGTTTCAGATGACCCAGTGCGGATTTTTCTATAGGAAT TCGATACTGCAATTTTCCTTTGTTTATAAGATCTCTAACTCAAACCTCATTTTATTATTC TTTGAC