- Transcript HORVU4Hr1G060940.11
- Transcript IDHORVU4Hr1G060940.11
- Gene IDHORVU4Hr1G060940
Barley RTD
Exon Structure of HORVU4Hr1G060940.11
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 511456072 | 511455947 | + |
| chr4H | 2 | 511457260 | 511457229 | + |
| chr4H | 3 | 511457495 | 511457384 | + |
| chr4H | 4 | 511457741 | 511457592 | + |
| chr4H | 5 | 511458147 | 511457860 | + |
| chr4H | 6 | 511458396 | 511458273 | + |
| chr4H | 7 | 511458554 | 511458505 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g15890.2 | +1 | 3e-45 | 157 | 71/80 (89%) | protein|RNA recognition motif containing protein, expressed |
| TAIR PP10 | AT1G07350 @ ARAPORT AT1G07350.2 @ TAIR |
+1 | 3e-36 | 126 | 56/82 (68%) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2258816-2259586 REVERSE LENGTH=129 |
| BRACH PP3 | Bradi1g67145.1.p | +1 | 3e-48 | 164 | 76/80 (95%) | pacid=32805382 transcript=Bradi1g67145.1 locus=Bradi1g67145 ID=Bradi1g67145.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (882 bp)
>HORVU4Hr1G060940.11 882 150831_barley_pseudomolecules CACACGAGCGCGCGTGCACCATCCAACGGGAAAAGAGAGGCGGTGGTCGCAGGTCGGAAC TGACGGAGGCAGAGGCGAAGACGAAGACAGAGACTCGAGAGGCCTCGCAGCGGCGACGAA TCAAAGATGTCGTATTCGAGGTACAGGAGTCGTTCAAGGAGTGTGGACTCGAGTGATGTT GAGAACCCTGGGAACAATCTCTTTGTGACTGGTTTATCATCTCGTCTAACTGATCGAGAT CTGGAGAAGCATTTCTCTACAGAGGGAGAGGTGATTGATGCAAGTATTGTACTTGATCCA TGGACAAGGGAATCACGGGGATTTGGATTTGTTACCATGGCCAATCTTAAGGAGGCAGAA CGCTGCATCAAATATCTCGACAGTTCAGTGCTGGAAGGTCGTGTCATTACTGTTGAGAAG ATTTTGTTGACAGCAGCAGGTTGATGCCCGCAGCTGTATGGCATCAAATTCAAAAGATAC ACAACCTAAGATCGAAACAATGCTACCTCAACCAAAGGGTTGTACGCCCACCGTTATTTT ATTTTTCTGTATTATTTGTGTAGTTCAGATCCCCAATAATTTATCCAGTCTTGCTTTTGA CATAAAACACAATTACTGATTTGGAGCCCCCTTCTCCACCACAGGCAAAGAGAAGACGAG GTCGAACCCCAACACCGGGAAGGTACCTTGGCAGCAAATCATCGCGTCGAAGGAGGTATT CCCGAAGCAGGTCACCTGTTAGGAGAGACCGTTACGGCTCACGCTACCCGCCCGAGCTAG AACGTTCTTATTCTCCTTATCGCAGAGGACGATCATACTCTCGTCATGACAGGTCGGAGT CTCCCTACCACAGGCGTAGATCCTACTCACCCTACGACAGGC