Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G060940.10

ChromosomeExonStartStopDirection
chr4H1511456072511455947+
chr4H2511457260511457228+
chr4H3511457495511457384+
chr4H4511457741511457592+
chr4H5511458147511458084+
chr4H6511458554511458273+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g15890.2 +2 7e-47 160 73/82 (89%) protein|RNA recognition motif containing protein, expressed
TAIR PP10 AT1G07350 @ ARAPORT
AT1G07350.2 @ TAIR		 +2 1e-35 124 55/80 (69%) Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2258816-2259586 REVERSE LENGTH=129
BRACH PP3 Bradi1g67145.1.p +2 1e-49 167 78/82 (95%) pacid=32805382 transcript=Bradi1g67145.1 locus=Bradi1g67145 ID=Bradi1g67145.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (767 bp)

>HORVU4Hr1G060940.10 767 150831_barley_pseudomolecules
CACACGAGCGCGCGTGCACCATCCAACGGGAAAAGAGAGGCGGTGGTCGCAGGTCGGAAC
TGACGGAGGCAGAGGCGAAGACGAAGACAGAGACTCGAGAGGCCTCGCAGCGGCGACGAA
TCAAAGGATGTCGTATTCGAGGTACAGGAGTCGTTCAAGGAGTGTGGACTCGAGTGATGT
TGAGAACCCTGGGAACAATCTCTTTGTGACTGGTTTATCATCTCGTCTAACTGATCGAGA
TCTGGAGAAGCATTTCTCTACAGAGGGAGAGGTGATTGATGCAAGTATTGTACTTGATCC
ATGGACAAGGGAATCACGGGGATTTGGATTTGTTACCATGGCCAATCTTAAGGAGGCAGA
ACGCTGCATCAAATATCTCGACAGTTCAGTGCTGGAAGGTCGTGTCATTACTGTTGAGAA
GGCAAAGAGAAGACGAGGTCGAACCCCAACACCGGGAAGGTACCTTGGCAGCAAATCATC
GCGTCGAAGGAGGTATTCCCGAAGCAGGTCACCTGTTAGGAGAGACCGTTACGGCTCACG
CTACCCGCCCGAGCTAGAACGTTCTTATTCTCCTTATCGCAGAGGACGATCATACTCTCG
TCATGACAGGCATAGATCATACTCCCCCTATGGAAGGAGGCCATCCTACTCCCCCTATGA
AAGGAGGCCATCCTACTCTCCCTATGGCAGAAGGAGATCATACTCTCCTTCCGACAGGTC
GGAGTCTCCCTACCACAGGCGTAGATCCTACTCACCCTACGACAGGC