Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G057650.9

ChromosomeExonStartStopDirection
chr4H1483706263483705915+
chr4H2483706465483706392+
chr4H3483706600483706541+
chr4H4483706780483706679+
chr4H5483707382483707226+
chr4H6483711613483711561+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g27320.3 +1 8e-57 165 103/125 (82%) protein|steroid binding protein, putative, expressed
TAIR PP10 AT5G58220 @ ARAPORT
AT5G58220.3 @ TAIR		 +1 4e-34 108 68/134 (51%) Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=311
BRACH PP3 Bradi1g60700.3.p +1 9e-54 176 105/126 (83%) pacid=32804009 transcript=Bradi1g60700.3 locus=Bradi1g60700 ID=Bradi1g60700.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (795 bp)

>HORVU4Hr1G057650.9 795 150831_barley_pseudomolecules
CTTACCCTTCCGGCAAAAACAGGTGTTGCTCTCGTAGCGCTCGCTCTCACCCACCCTTCC
CCAACTCGCATCCAGCGCCGCAACCCCTCGTCTCTCCCCCCCTTCCGATCTGAGGCGTCG
TTGGAGATCGGCGGCAACCGAAGAGGCGTCCGACGACGGCCGTCGCGGGTGGCACCAGTG
CAGTGGAGCAAATCAACCAGTTGAGATGGCGACATTGAGGCCGCTGAGCGTGGAGGAGGT
GCTGAGGGTGAACGGCAGCCACCGCTTTGCCGCCGCGCTGGCTGCCGCCTCCCCCTTTGA
TTCTCTTGCCAACGCGCTCCTTGCCGCCCGCCGCATCTGGCTGAACGAGGTGGACGTGAC
TGGATGGCTGGAGGCCTTCGCTGCCCACCCACCCATCGGAAGCACCTCCTCCTCCGTCTC
CAAAGGTGGAGCAAGGAAGAGCAATCAGCTGCTCTTTCCACAGCCACTGATTCGACTGCG
CAGGAGTTGTCCGAGTGGAATGCCAAATACAGGGAGAAGTTTGGGTTCGTGTTCATGATA
TGCGCATCTGGGAGGACTGCCCCTGAGGTCTTAGCTGAGCTTAAGAGGCGTTATGCAAAT
AGACCAGTTGTTGAGCTTGAGGCTGCGGCAGAGGAAGAACTGAAGATAACTGAGCTGCGT
CTTGCAAAGCTTTTCGCATCAGAAACTGCTGCTCCCCCTACTTCAGGTGAAAATCAGATT
AGCCAACCGGATAAAGCAGCAGGCAACTCCAACCGGACACGCCCTCCTATCACAACCCAT
GTGCTGGACACGGCT