Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u2973695.8++6235-277Containing




Transcripts from Gene HORVU4Hr1G057650

TranscriptLength(bp)Description
HORVU4Hr1G057650.1981gene=HORVU4Hr1G057650 CDS=690-980
HORVU4Hr1G057650.2988gene=HORVU4Hr1G057650 CDS=681-986
HORVU4Hr1G057650.3771gene=HORVU4Hr1G057650 CDS=218-550
HORVU4Hr1G057650.4931gene=HORVU4Hr1G057650 CDS=376-930
HORVU4Hr1G057650.5931gene=HORVU4Hr1G057650 CDS=376-930
HORVU4Hr1G057650.6800gene=HORVU4Hr1G057650 CDS=217-798
HORVU4Hr1G057650.71311gene=HORVU4Hr1G057650 CDS=217-1140
HORVU4Hr1G057650.81386gene=HORVU4Hr1G057650 CDS=217-1215
HORVU4Hr1G057650.9795gene=HORVU4Hr1G057650 CDS=364-795
HORVU4Hr1G057650.10795gene=HORVU4Hr1G057650 CDS=364-795
HORVU4Hr1G057650.11857gene=HORVU4Hr1G057650 CDS=199-855
HORVU4Hr1G057650.12773gene=HORVU4Hr1G057650 CDS=193-456
HORVU4Hr1G057650.13743gene=HORVU4Hr1G057650 CDS=191-454
HORVU4Hr1G057650.141263gene=HORVU4Hr1G057650 CDS=190-1113
HORVU4Hr1G057650.15987gene=HORVU4Hr1G057650 CDS=236-832
HORVU4Hr1G057650.16485gene=HORVU4Hr1G057650 CDS=1-483



Exon Structure of HORVU4Hr1G057650


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g27320.1 +1 2e-163 465 284/335 (85%) protein|steroid binding protein, putative, expressed
TAIR PP10 AT5G58220 @ ARAPORT
AT5G58220.1 @ TAIR		 +1 3e-92 282 167/321 (52%) Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=324
BRACH PP3 Bradi1g60700.1.p +1 1e-178 503 292/333 (88%) pacid=32804008 transcript=Bradi1g60700.1 locus=Bradi1g60700 ID=Bradi1g60700.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons