Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G057650.6

ChromosomeExonStartStopDirection
chr4H1483706263483705904+
chr4H2483706465483706392+
chr4H3483706600483706540+
chr4H4483706780483706679+
chr4H5483707382483707226+
chr4H6483711606483711561+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g27320.3 +1 1e-72 226 161/196 (82%) protein|steroid binding protein, putative, expressed
TAIR PP10 AT5G58220 @ ARAPORT
AT5G58220.3 @ TAIR		 +1 6e-43 148 95/190 (50%) Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=311
BRACH PP3 Bradi1g60700.3.p +1 2e-85 258 163/194 (84%) pacid=32804009 transcript=Bradi1g60700.3 locus=Bradi1g60700 ID=Bradi1g60700.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (800 bp)

>HORVU4Hr1G057650.6 800 150831_barley_pseudomolecules
TTCACCTTCGTCTTACCCTTCCGGCAAAAACAGGTGTTGCTCTCGTAGCGCTCGCTCTCA
CCCACCCTTCCCCAACTCGCATCCAGCGCCGCAACCCCTCGTCTCTCCCCCCCTTCCGAT
CTGAGGCGTCGTTGGAGATCGGCGGCAACCGAAGAGGCGTCCGACGACGGCCGTCGCGGG
TGGCACCAGTGCAGTGGAGCAAATCAACCAGTTGAGATGGCGACATTGAGGCCGCTGAGC
GTGGAGGAGGTGCTGAGGGTGAACGGCAGCCACCGCTTTGCCGCCGCGCTGGCTGCCGCC
TCCCCCTTTGATTCTCTTGCCAACGCGCTCCTTGCCGCCCGCCGCATCTGGCTGAACGAG
GTGGACGTGACTGGATGGCTGGAGGCCTTCGCTGCCCACCCACCCATCGGAAGCACCTCC
TCCTCCGTCTCCAACAGGTGGAGCAAGGAAGAGCAATCAGCTGCTCTTTCCACAGCCACT
GATTCGACTGCGCAGGAGTTGTCCGAGTGGAATGCCAAATACAGGGAGAAGTTTGGGTTC
GTGTTCATGATATGCGCATCTGGGAGGACTGCCCCTGAGGTCTTAGCTGAGCTTAAGAGG
CGTTATGCAAATAGACCAGTTGTTGAGCTTGAGGCTGCGGCAGAGGAAGAACTGAAGATA
ACTGAGCTGCGTCTTGCAAAGCTTTTCGCATCAGAAACTGCTGCTCCCCCTACTTCAGGT
GAAAATCAGATTAGCCAACCGGATAAAGCAGCAGGCAACTCCAACCGGACACGCCCTCCT
ATCACAACCCATGTGCTGGA