- Transcript HORVU4Hr1G057650.5
- Transcript IDHORVU4Hr1G057650.5
- Gene IDHORVU4Hr1G057650
Barley RTD
Exon Structure of HORVU4Hr1G057650.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 483706263 | 483705903 | + |
| chr4H | 2 | 483706467 | 483706392 | + |
| chr4H | 3 | 483706600 | 483706543 | + |
| chr4H | 4 | 483706780 | 483706679 | + |
| chr4H | 5 | 483707382 | 483707226 | + |
| chr4H | 6 | 483711662 | 483711486 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g27320.1 | +1 | 3e-75 | 234 | 138/165 (84%) | protein|steroid binding protein, putative, expressed |
| TAIR PP10 | AT5G58220 @ ARAPORT AT5G58220.1 @ TAIR |
+1 | 8e-45 | 145 | 85/162 (52%) | Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=324 |
| BRACH PP3 | Bradi1g60700.1.p | +1 | 8e-79 | 243 | 140/164 (85%) | pacid=32804008 transcript=Bradi1g60700.1 locus=Bradi1g60700 ID=Bradi1g60700.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (931 bp)
>HORVU4Hr1G057650.5 931 150831_barley_pseudomolecules ATTCACCTTCGTCTTACCCTTCCGGCAAAAACAGGTGTTGCTCTCGTAGCGCTCGCTCTC ACCCACCCTTCCCCAACTCGCATCCAGCGCCGCAACCCCTCGTCTCTCCCCCCCTTCCGA TCTGAGGCGTCGTTGGAGATCGGCGGCAACCGAAGAGGCGTCCGACGACGGCCGTCGCGG GTGGCACCAGTGCAGTGGAGCAAATCAACCAGTTGAGATGGCGACATTGAGGCCGCTGAG CGTGGAGGAGGTGCTGAGGGTGAACGGCAGCCACCGCTTTGCCGCCGCGCTGGCTGCCGC CTCCCCCTTTGATTCTCTTGCCAACGCGCTCCTTGCCGCCCGCCGCATCTGGCTGAACGA GGTGGACGTGACTGGATGGCTGGAGGCCTTCGCTGCCCACCCACCCATCGGAAGCACCTC CTCCTCCGTCTCCAAGTGTGGAGCAAGGAAGAGCAATCAGCTGCTCTTTCCACAGCCACT GATTCGACTGCGCAGGAGTTGTCCGAGTGGAATGCCAAATACAGGGAGAAGTTTGGGTTC GTGTTCATGATATGCGCATCTGGGAGGACTGCCCCTGAGGTCTTAGCTGAGCTTAAGAGG CGTTATGCAAATAGACCAGTTGTTGAGCTTGAGGCTGCGGCAGAGGAAGAACTGAAGATA ACTGAGCTGCGTCTTGCAAAGCTTTTCGCATCAGAAACTGCTGCTCCCCCTACTTCAGGT GAAAATCAGATTAGCCAACCGGATAAAGCAGCAGATCGGATGCGGATTATTGGTGCACAC CTTGGAGCTCTTTCCCAGCTTTCTGCCTATAAAGCTCCTGAAATTACAGGCAACTCCAAC CGGACACGCCCTCCTATCACAACCCATGTGCTGGACACGGCTCTTGGATCGCCAGCATCT GGAATTGAAGTTCACCTGGAGATGTGGAAGG