Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G057650.3

ChromosomeExonStartStopDirection
chr4H1483706263483705903+
chr4H2483706465483706392+
chr4H3483706602483706543+
chr4H4483706780483706679+
chr4H5483707382483707226+
chr4H6483711577483711561+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g27320.3 +1 8e-45 132 80/112 (71%) protein|steroid binding protein, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi1g60700.3.p +1 4e-54 143 83/113 (73%) pacid=32804009 transcript=Bradi1g60700.3 locus=Bradi1g60700 ID=Bradi1g60700.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (771 bp)

>HORVU4Hr1G057650.3 771 150831_barley_pseudomolecules
ATTCACCTTCGTCTTACCCTTCCGGCAAAAACAGGTGTTGCTCTCGTAGCGCTCGCTCTC
ACCCACCCTTCCCCAACTCGCATCCAGCGCCGCAACCCCTCGTCTCTCCCCCCCTTCCGA
TCTGAGGCGTCGTTGGAGATCGGCGGCAACCGAAGAGGCGTCCGACGACGGCCGTCGCGG
GTGGCACCAGTGCAGTGGAGCAAATCAACCAGTTGAGATGGCGACATTGAGGCCGCTGAG
CGTGGAGGAGGTGCTGAGGGTGAACGGCAGCCACCGCTTTGCCGCCGCGCTGGCTGCCGC
CTCCCCCTTTGATTCTCTTGCCAACGCGCTCCTTGCCGCCCGCCGCATCTGGCTGAACGA
GGTGGACGTGACTGGATGGCTGGAGGCCTTCGCTGCCCACCCACCCATCGGAAGCACCTC
CTCCTCCGTCTCCAAGTGGAGCAAGGAAGAGCAATCAGCTGCTCTTTCCACAGCCACTGA
TTCGACTGCGCAGGTGAGTTGTCCGAGTGGAATGCCAAATACAGGGAGAAGTTTGGGTTC
GTGTTCATGATATGCGCATCTGGGAGGACTGCCCCTGAGGTCTTAGCTGAGCTTAAGAGG
CGTTATGCAAATAGACCAGTTGTTGAGCTTGAGGCTGCGGCAGAGGAAGAACTGAAGATA
ACTGAGCTGCGTCTTGCAAAGCTTTTCGCATCAGAAACTGCTGCTCCCCCTACTTCAGGT
GAAAATCAGATTAGCCAACCGGATAAAGCAGCAGGCAACTCCAACCGGACA