Barley RTD

Transcript HORVU4Hr1G057650.15

Transcript IDHORVU4Hr1G057650.15
Gene IDHORVU4Hr1G057650

Transcript Data

|Exon Structure|
|Homologues|
|Barley GBrowse|
|CDS Sequence|

Barley RTD

Links

Exon Structure of HORVU4Hr1G057650.15

Chromosome	Exon	Start	Stop	Direction
chr4H	1	483706092	483705967	+
chr4H	2	483706600	483706543	+
chr4H	3	483706780	483706679	+
chr4H	4	483707379	483707226	+
chr4H	5	483712104	483711558	+

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g27320.3	+2	2e-132	380	204/244 (84%)	protein\|steroid binding protein, putative, expressed
TAIR PP10	AT5G58220 @ ARAPORT AT5G58220.3 @ TAIR	+2	6e-78	241	133/243 (55%)	Symbols: TTL \| transthyretin-like protein \| chr5:23554546-23555861 REVERSE LENGTH=311
BRACH PP3	Bradi1g60700.3.p	+2	2e-138	395	208/237 (88%)	pacid=32804009 transcript=Bradi1g60700.3 locus=Bradi1g60700 ID=Bradi1g60700.3.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

CDS Sequence (987 bp)

>HORVU4Hr1G057650.15 987 150831_barley_pseudomolecules
ACCCTTCCCCAACTCGCATCCAGCGCCGCAACCCCTCGTCTCTCCCCCCCTTCCGATCTG
AGGCGTCGTTGGAGATCGGCGGCAACCGAAGAGGCGTCCGACGACGGCCGTCGCGGGTGG
CACCAGGTGGAGCAAGGAAGAGCAATCAGCTGCTCTTTCCACAGCCACTGATTCGACTGC
GCAGGAGTTGTCCGAGTGGAATGCCAAATACAGGGAGAAGTTTGGGTTCGTGTTCATGAT
ATGCGCATCTGGGAGGACTGCCCCTGAGGTCTTAGCTGAGCTTAAGAGGCGTTATGCAAA
TAGACCAGTTGTTGAGCTTGAGGCTGCGGCAGAGGAAGAACTGAAGATAACTGAGCTGCG
TCTTGCAAAGCTTTTCGCATCAGAAACTGCTGCTCCCCCTACTTCAGGTGAAAATCAGAT
TAGCCAACCGGATAAAGCAGCAGGCAACTCCAACCGGACACGCCCTCCTATCACAACCCA
TGTGCTGGACACGGCTCTTGGATCGCCAGCATCTGGAATTGAAGTTCACCTGGAGATGTG
GAAGGACGCGTCAAGTACCCCGTCATTTGACAACAAAGATTTCAAGGGATGGACAACCCT
AGGCTCTTCGATTACAAACAATGATGGACGCAGCGGTCAGCTGATGGACATCGTTGACAA
TGTCACTCCTGGTTTCTACCGCATAAGTTTCAATACCTCCAAGTATGCACCGTCAGGGTT
CTTCCCTTACGTGAGCATCATATTTGAGATAAAAAGAAGCCAGGCGACCGAGCATTTCCA
TGTGCCTCTTTTACATTCTCCTTTTTCCTTTACCACTTACCGTGGCAGCTAAGCTGTCAA
TTTGTGTGTAAATCACATCGAGTGATGGTATTGTTCTGAAACAAGCATAAATGGTCGTAA
ATCAGGGTGTTTAGATGTCACTGACATTGTGATATTTGAATAATAATGTTCCATGTAATA
ATAAGCTCGAGTATGCAGTGACATTGG