Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G057650.12

ChromosomeExonStartStopDirection
chr4H1483706263483705928+
chr4H2483706466483706392+
chr4H3483706600483706543+
chr4H4483706780483706679+
chr4H5483707382483707226+
chr4H6483711605483711561+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g27320.3 +2 2e-46 158 100/119 (84%) protein|steroid binding protein, putative, expressed
TAIR PP10 AT5G58220 @ ARAPORT
AT5G58220.3 @ TAIR		 +2 2e-32 104 65/124 (52%) Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=311
BRACH PP3 Bradi1g60700.3.p +2 2e-49 165 100/118 (85%) pacid=32804009 transcript=Bradi1g60700.3 locus=Bradi1g60700 ID=Bradi1g60700.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (773 bp)

>HORVU4Hr1G057650.12 773 150831_barley_pseudomolecules
CAAAAACAGGTGTTGCTCTCGTAGCGCTCGCTCTCACCCACCCTTCCCCAACTCGCATCC
AGCGCCGCAACCCCTCGTCTCTCCCCCCCTTCCGATCTGAGGCGTCGTTGGAGATCGGCG
GCAACCGAAGAGGCGTCCGACGACGGCCGTCGCGGGTGGCACCAGTGCAGTGGAGCAAAT
CAACCAGTTGAGATGGCGACATTGAGGCCGCTGAGCGTGGAGGAGGTGCTGAGGGTGAAC
GGCAGCCACCGCTTTGCCGCCGCGCTGGCTGCCGCCTCCCCCTTTGATTCTCTTGCCAAC
GCGCTCCTTGCCGCCCGCCGCATCTGGCTGAACGAGGTGGACGTGACTGGATGGCTGGAG
GCCTTCGCTGCCCACCCACCCATCGGAAGCACCTCCTCCTCCGTCTCCAAGGTGGAGCAA
GGAAGAGCAATCAGCTGCTCTTTCCACAGCCACTGATTCGACTGCGCAGGAGTTGTCCGA
GTGGAATGCCAAATACAGGGAGAAGTTTGGGTTCGTGTTCATGATATGCGCATCTGGGAG
GACTGCCCCTGAGGTCTTAGCTGAGCTTAAGAGGCGTTATGCAAATAGACCAGTTGTTGA
GCTTGAGGCTGCGGCAGAGGAAGAACTGAAGATAACTGAGCTGCGTCTTGCAAAGCTTTT
CGCATCAGAAACTGCTGCTCCCCCTACTTCAGGTGAAAATCAGATTAGCCAACCGGATAA
AGCAGCAGGCAACTCCAACCGGACACGCCCTCCTATCACAACCCATGTGCTGG