- Transcript HORVU4Hr1G057650.11
- Transcript IDHORVU4Hr1G057650.11
- Gene IDHORVU4Hr1G057650
Exon Structure of HORVU4Hr1G057650.11
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr4H | 1 | 483706263 | 483705922 | + |
chr4H | 2 | 483706465 | 483706392 | + |
chr4H | 3 | 483706600 | 483706540 | + |
chr4H | 4 | 483706780 | 483706679 | + |
chr4H | 5 | 483707382 | 483707226 | + |
chr4H | 6 | 483711606 | 483711486 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g27320.1 | +1 | 1e-87 | 265 | 181/221 (82%) | protein|steroid binding protein, putative, expressed |
TAIR PP10 | AT5G58220 @ ARAPORT AT5G58220.1 @ TAIR |
+1 | 8e-48 | 162 | 103/207 (50%) | Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=324 |
BRACH PP3 | Bradi1g60700.1.p | +1 | 1e-101 | 301 | 185/219 (84%) | pacid=32804008 transcript=Bradi1g60700.1 locus=Bradi1g60700 ID=Bradi1g60700.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (857 bp)
>HORVU4Hr1G057650.11 857 150831_barley_pseudomolecules TTCCGGCAAAAACAGGTGTTGCTCTCGTAGCGCTCGCTCTCACCCACCCTTCCCCAACTC GCATCCAGCGCCGCAACCCCTCGTCTCTCCCCCCCTTCCGATCTGAGGCGTCGTTGGAGA TCGGCGGCAACCGAAGAGGCGTCCGACGACGGCCGTCGCGGGTGGCACCAGTGCAGTGGA GCAAATCAACCAGTTGAGATGGCGACATTGAGGCCGCTGAGCGTGGAGGAGGTGCTGAGG GTGAACGGCAGCCACCGCTTTGCCGCCGCGCTGGCTGCCGCCTCCCCCTTTGATTCTCTT GCCAACGCGCTCCTTGCCGCCCGCCGCATCTGGCTGAACGAGGTGGACGTGACTGGATGG CTGGAGGCCTTCGCTGCCCACCCACCCATCGGAAGCACCTCCTCCTCCGTCTCCAACAGG TGGAGCAAGGAAGAGCAATCAGCTGCTCTTTCCACAGCCACTGATTCGACTGCGCAGGAG TTGTCCGAGTGGAATGCCAAATACAGGGAGAAGTTTGGGTTCGTGTTCATGATATGCGCA TCTGGGAGGACTGCCCCTGAGGTCTTAGCTGAGCTTAAGAGGCGTTATGCAAATAGACCA GTTGTTGAGCTTGAGGCTGCGGCAGAGGAAGAACTGAAGATAACTGAGCTGCGTCTTGCA AAGCTTTTCGCATCAGAAACTGCTGCTCCCCCTACTTCAGGTGAAAATCAGATTAGCCAA CCGGATAAAGCAGCAGATCGGATGCGGATTATTGGTGCACACCTTGGAGCTCTTTCCCAG CTTTCTGCCTATAAAGCTCCTGAAATTACAGGCAACTCCAACCGGACACGCCCTCCTATC ACAACCCATGTGCTGGA